Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5490 ATGGAAGCTAACAAGTTTAGTTTGGTATTTTTATGTGTATTTTATCTTGCTATATTCCCTATCCTAAGGGCTAACATAGCTCATTTCGACGAAGTCTGGCAGCAGCGATCTCTGGAGGCCACGAAGGCCGCTCATGAGGCTTACAAACCAAACCCTGAAAAAGTTACTGCTGATTTCAATAAGCATGTCCGCAGGGCTGTGCTAGGCTCCAGCAGTACAAGAAGGGGCTTATCCGGCAAATACCACGGTGCATGCAAGGCCACAAACCCCATCGACAGATGTTGGAGATGCGATCCAAACTGGGCCAAACACCGCAAGAGGCTAGCAAACTGCGTCCTCGGCTTCGGCACCGGCACAACCGGTGGTAAAGCTGGTAGATACTACGTGGTCACTGATCCCTCCGACGGAGACCTAGTGAACCCTAAACCCGGGACCCTAAGACATGCGGTGATTCAGAAAGAGCCGCTATGGATCACGTTTGCGCGTAACATGAACATAAGACTCAGCGGTGAGCTTCTGGTGGCTGATAACAAGACCATAGATGCGCGTGGCGCCAATGTTCACATCAGCTACGGTGGTCAAATCACGATGCAGTTTGTGAAGAACATCATCATCCACGGGCTCCATGTTCATCATATTAAGAAAGGTGGTGGTGGACTCCTTAGAGACTCGGTGGATCATTATGGGTACCGCACGCAGGCTGATGGAGATGGGATTTCAATTTATGGATCGACGAATGTTTGGATTGATCATGTTTCCATGACTAGGTGTGATGATGGGCTCATTGATGCTATTATGGGTTCAACCGCTATTACCATCTCAAACTGCCATTTCACCGATCATAATGAAGTAATGTTATTTGGTGCTAGTGATGGTTTCTCAGGGGATAAAATCATGCAAATAACTCTGGCTTTCAACCATTTTGGGAAAGGATTGGTACAGAGGCTCCCAAGGTGTAGATGGGGCTTCTTTCATATTGTTAACAATGACTACACTCATTGGCTAATGTATGCCATTGGTGGTAGCCAAAATCCCACCATTCTCAGCCAGGGCAATCGATTTATTGCTCCTCCAAACATACGTTCCAAAGAAGTAACAAAGAGAGACTACGCACCTGAAAGTGTGTGGAGGACATGGAATTGGAGATCAGAAAATGATTTGATGATGAATGGAGCCTACTTTGTTCAGTCTGGACAAAAGCTTGCAAAACTTCCAAAGTCAGTAATTGTTGCAAAGCCTGGGAAATTTGTATCCAGTCTCACTCGCTTTGCAGGTTCTCTAAAATGTGTAGTAAATAGACCATGCTGA 1308 0.4602 MEANKFSLVFLCVFYLAIFPILRANIAHFDEVWQQRSLEATKAAHEAYKPNPEKVTADFNKHVRRAVLGSSSTRRGLSGKYHGACKATNPIDRCWRCDPNWAKHRKRLANCVLGFGTGTTGGKAGRYYVVTDPSDGDLVNPKPGTLRHAVIQKEPLWITFARNMNIRLSGELLVADNKTIDARGANVHISYGGQITMQFVKNIIIHGLHVHHIKKGGGGLLRDSVDHYGYRTQADGDGISIYGSTNVWIDHVSMTRCDDGLIDAIMGSTAITISNCHFTDHNEVMLFGASDGFSGDKIMQITLAFNHFGKGLVQRLPRCRWGFFHIVNNDYTHWLMYAIGGSQNPTILSQGNRFIAPPNIRSKEVTKRDYAPESVWRTWNWRSENDLMMNGAYFVQSGQKLAKLPKSVIVAKPGKFVSSLTRFAGSLKCVVNRPC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5490 435 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Lja1g5490 435 PANTHER PECTATE LYASE 6 435 - -
Lja1g5490 435 Pfam Pectate lyase 176 354 IPR002022 -
Lja1g5490 435 PANTHER PECTATE LYASE 18-RELATED 6 435 IPR045032 GO:0030570
Lja1g5490 435 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Lja1g5490 435 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Lja1g5490 435 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Lja1g5490 435 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Lja1g5490 435 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Lja1g5490 435 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Lja1g5490 435 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Lja1g5490 435 Gene3D - 88 428 IPR012334 -
Lja1g5490 435 SUPERFAMILY Pectin lyase-like 79 429 IPR011050 -
Lja1g5490 435 SMART amb_all 163 360 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5490 Lja-Chr1 93973020 93977501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5490 3 435 Polysaccharide Lyase AT3G01270 57.173 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5490 K01728 - gmx:100801864 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5490 1 93973020 93977501 Lja4g2172 4 23402482 23404959 ECH
Lja1g2894 1 34969781 34971956 Lja1g5490 1 93973020 93977501 ECH
Lja2g1640 2 16319169 16321666 Lja1g5490 1 93973020 93977501 ECH
Lja2g1110 2 10525568 10527945 Lja1g5490 1 93973020 93977501 ECH
Lja1g5490 1 93973020 93977501 Lja1g5490 1 93973020 93977501 ECH