Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5485 ATGGATCAAACTTCCACTAAAGATCTCGGTAAAGAGATATGCACAGAAGAAAGGCCTTTCCCATGCAAATATTGCAGTCAAAAGTACTCTTCCTCACAAGCTTTGGGAGGACACCAAAATGCACATAAAAAAGAGCGCACCCTAGAAAAATTTCGTAAAGACTTTCACGCTGATCGTTTTAGGCTTCCCCCATATCCTTCTTATCCTTATCCTCTTTCCTCTCCCTCTATTCATGCAGGGTACATGTCATTTCGTGGCTCCTTGATTCCAAGGATTTCTTTTCCTTGGACATCAACTGGACTTTATCCTTCCTTATCACCACAATTTAATGCAATAGGAAATATGAAAAGTCATGCAATTCAAAGTACAAGAGAAGAGAATGGTAATGAAACACTTTCACTTTTTCCAAATGTTACAGCCAATCTAGCCAGCCATGTTATGAACAAACCAATAAGAAGTGATCTTCATTCCATGCCAGAAGAAAATTCCGACATTGATTTGTCACTTACTCTTGCTTTAAAACGATGA 528 0.3864 MDQTSTKDLGKEICTEERPFPCKYCSQKYSSSQALGGHQNAHKKERTLEKFRKDFHADRFRLPPYPSYPYPLSSPSIHAGYMSFRGSLIPRISFPWTSTGLYPSLSPQFNAIGNMKSHAIQSTREENGNETLSLFPNVTANLASHVMNKPIRSDLHSMPEENSDIDLSLTLALKR* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5485 175 Gene3D Classic Zinc Finger 3 60 - -
Lja1g5485 175 SUPERFAMILY beta-beta-alpha zinc fingers 15 48 IPR036236 -
Lja1g5485 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Lja1g5485 175 PANTHER ZINC FINGER PROTEIN JAGGED 16 171 IPR045320 GO:0003700
Lja1g5485 175 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Lja1g5485 175 PANTHER OS02G0182300 PROTEIN 16 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5485 Lja-Chr1 93882843 93883370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5485 1 171 C2H2 Transcription Factor Family AT5G01860 31.461 1.69e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g5485 None None None