Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5482 ATGGGTCATGTAGCAGTGTGGCTGTTGTTTCTGATTACCATCACGCTTCACTGTCCTTTATCTTCTGCTCTCACTCAAGACGGGTTGACGTTGTTGGAAATCAAGAGCACTTTGAATGACACTAGGAATTTTCTCAGTGACTGGCAGGAGTTTGATGAGTCTCACTGCACTTGGACTGGTATTACTTGTCATCCCGGTGATCAACGAGTTCGCTCTATAAATTTGCCTTACATGCAACTTGGGGGAATTATATCTCCTAGCATTGGCAAACTCAGTAGACTACATAGATTGGCGCTTCATCAGAATGGCTTACACGGAATTATCCCCAATGAGATTTGCAAGTGTACTGAGCTTAGAGCACTGTACTTGAGGGCTAATTATTTCCAAGGAGGTTTCCCACCAGATATCGGAAATCTTTCTTTTTTACATATATTAAAGTTCAAATACAGGGATTTATCTAGCAACTCATTAAAGGGTGCTATACCTTCTTCTGTTGGCCGTCTCACGCATTTGCGAGTTCTGAACTTGTCAACTAATTTCTTTTCCGGTGAAGTCCCTGATATTGGAGTACTAAGCACCTTTGGCAACAATGCGTTTATTGGGAATTTAGATCTTTGTGGGCGTCAAGTCCAAAAACCATGTCGGACATCACTTGGTTTCCCTGCAGTGCTACCACGTGCTGAAGGCGAAGAAGCTACAGTCCCTACCAAAAGATCTTCACATTATGTGAAATGGGTGCTAATTGTTGCAATAATAGCAATGGGTGTTTCACTTGTCTTTATCCTTTCATTACTCTGGATTTGCTCTCTATCAAAGAATGAAAGAGCTGCGAGGAGATACAAAGAAGTCAAGAAACAATTCAGTTCAGAATCAAGTATAATAGATGGAACAAAACTTACTACTTTCCATGGTGATCTTCCATACACAACATCAGAGATTATAGAAAAGCTAGAGTCTCTTGATGATGATGACGTGGTAGGGTCGGGAGGATTTGGTACTGTTTACCGAATTGTTATGAATGATTGTTGTACATTTGCTGTTAAGCGGATTGATAGAAGTCGTCAAGGTTCTGATCAAGGGTTTGAAAGGGAACTAGAGATCTTGGGTAGCATCAAGCACATTAATCTAGTAAACCTGCGTGGTTACTGCAGGCTCCCTTCTACAAAGCTTCTAATCTATGATTATTTGGCCATGGGGAGCTTAGATGATCTCTTGCATGAAAATACTGAACAATTACTAAATTGGAGTACTCGCCTGAAGATAGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCATGACTGCTGCCCAAAAATTGTGCATCGTGACATAAAATCCAGCAATATCCTTCTTGACGAAAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGACGCCCATGTTACAACAGTGGTTGCCGGCACATTCGGCTATTTGGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTGTATAGCTTTGGAGTTTTATTGCTAGAACTTGTGACTGGAAAGAGACCTACAGATCCTTCCTTTGCAAATAAAGGCCTAAATGTTGTTGGTTGGATGAAAACATATCTGAGAGAAGACACATTGGAAGAGGTGGTAGACAAAAGGTGCAGTGATGCAGAATGGGAATCTGTTGAAGTGATTCTTGAGCTAGCAGCAAGTTGCACAGATGCAAACGCGGATGACCGGCCATCAATGAACCAGGTATTACAGTTGTTGGAACAAGAGGTCATGTCTCCTTGCCCAAGTGATCTTTATGAGTCACATTCAGATCACTGA 1824 0.4216 MGHVAVWLLFLITITLHCPLSSALTQDGLTLLEIKSTLNDTRNFLSDWQEFDESHCTWTGITCHPGDQRVRSINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGIIPNEICKCTELRALYLRANYFQGGFPPDIGNLSFLHILKFKYRDLSSNSLKGAIPSSVGRLTHLRVLNLSTNFFSGEVPDIGVLSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPAVLPRAEGEEATVPTKRSSHYVKWVLIVAIIAMGVSLVFILSLLWICSLSKNERAARRYKEVKKQFSSESSIIDGTKLTTFHGDLPYTTSEIIEKLESLDDDDVVGSGGFGTVYRIVMNDCCTFAVKRIDRSRQGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQLLNWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFANKGLNVVGWMKTYLREDTLEEVVDKRCSDAEWESVEVILELAASCTDANADDRPSMNQVLQLLEQEVMSPCPSDLYESHSDH* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5482 607 SUPERFAMILY L domain-like 24 210 - -
Lja1g5482 607 Pfam Protein kinase domain 323 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5482 607 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Lja1g5482 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Lja1g5482 607 Gene3D Phosphorylase Kinase; domain 1 282 395 - -
Lja1g5482 607 ProSiteProfiles Protein kinase domain profile. 320 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5482 607 SUPERFAMILY Protein kinase-like (PK-like) 305 589 IPR011009 -
Lja1g5482 607 PANTHER RECEPTOR-LIKE PROTEIN 55 5 607 - -
Lja1g5482 607 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Lja1g5482 607 Gene3D Ribonuclease Inhibitor 25 216 IPR032675 -
Lja1g5482 607 SMART serkin_6 320 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5482 607 PANTHER LRR RECEPTOR-LIKE KINASE 5 607 - -
Lja1g5482 607 Gene3D Transferase(Phosphotransferase) domain 1 396 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5482 Lja-Chr1 93798696 93803929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5482 1 597 Receptor kinase-like Gene Family AT2G35620 46.833 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lja1g5482 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5482 - - lja:Lj0g3v0067549.1 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5482 1 93798696 93803929 Lja1g5482 1 93798696 93803929 ECH