Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5479 ATGGGTTCTTGGGCTACAGCATCGGCTCTGACAAACAAATTTATCCCATTGTCTGTCTCTATTACTGAATCTTCCATGAACTCCAAATTGAGCACCAGTTTCCATAAATTATATAGAAGTAAAAATAAAGGAAAATTCAGTCTCTCCTTTTCTAGGGACAATTATAAAGTTGAGAGTAATGGTGAAACCAAATCAGCCCGAAAAGTATCTTATTTGCAAACCTGGAAAAAACAAGGAGCTTGGGAAGAACCAGATATTGACAGTGACAGTGACAACGAGTTTGGTGATGACGAAGATGAGGAAGTTGAAGATGAGAACCTTGGATTTGAAAGTGATTGGGAAGAGGAAGAGTCAAAGACTTCAGCTATTACTGATGTTAGTATAACTTCAACGGACAAGTATGAGGAACAAGTTAAGAGAGAGGTTGAACAACTTTTGGAACCTGAAGAAAGAGCAATATTGCAACAAAATGTAACTCCTAACTTGGAAAAAATATCGTCTGCAAAATGGAGCCCGTTGCACTCTCTTGCACTATCAATGCAGATTAGTTGCATGGATAAGCTTCTTGAAAACGGACTTGATATTGATTTCCATAATAAGGATGGTCTCAGTGCACTTCATAAGGCAATTATAGGTAAAAAGGAAGCTGTAATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTTAAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGCAGACTGTGAAATTATTGATCAAGCACAATGTTGATGTCAATGTAGCAGATAATGAAGGTTGGACCCCGTTGCACGTAGCCATCCAAAGCAGAAATAGAGATATAGTGAAAATTTTGTTAGGCAATGGTGCAGATCAGACCAGAAAAAATAAGGATGGGAAAACAGCACTGGATCTAAGCTTATGTTATGGGAAAGACTTCAAGTCTTTTGACCTTGCCAGATTGTTGAAGGTGGTTCCAGCTACCAGAGATCTATAA 1002 0.3882 MGSWATASALTNKFIPLSVSITESSMNSKLSTSFHKLYRSKNKGKFSLSFSRDNYKVESNGETKSARKVSYLQTWKKQGAWEEPDIDSDSDNEFGDDEDEEVEDENLGFESDWEEEESKTSAITDVSITSTDKYEEQVKREVEQLLEPEERAILQQNVTPNLEKISSAKWSPLHSLALSMQISCMDKLLENGLDIDFHNKDGLSALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKHNVDVNVADNEGWTPLHVAIQSRNRDIVKILLGNGADQTRKNKDGKTALDLSLCYGKDFKSFDLARLLKVVPATRDL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5479 333 MobiDBLite consensus disorder prediction 85 109 - -
Lja1g5479 333 PRINTS Ankyrin repeat signature 235 250 IPR002110 GO:0005515
Lja1g5479 333 PRINTS Ankyrin repeat signature 283 297 IPR002110 GO:0005515
Lja1g5479 333 ProSiteProfiles Ankyrin repeat profile. 201 233 IPR002110 GO:0005515
Lja1g5479 333 ProSiteProfiles Ankyrin repeat region circular profile. 267 293 - -
Lja1g5479 333 ProSiteProfiles Ankyrin repeat region circular profile. 234 266 - -
Lja1g5479 333 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 78 325 - -
Lja1g5479 333 ProSiteProfiles Ankyrin repeat profile. 234 266 IPR002110 GO:0005515
Lja1g5479 333 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 78 325 - -
Lja1g5479 333 SMART ANK_2a 234 263 IPR002110 GO:0005515
Lja1g5479 333 SMART ANK_2a 267 296 IPR002110 GO:0005515
Lja1g5479 333 SMART ANK_2a 168 197 IPR002110 GO:0005515
Lja1g5479 333 SMART ANK_2a 300 333 IPR002110 GO:0005515
Lja1g5479 333 SMART ANK_2a 201 230 IPR002110 GO:0005515
Lja1g5479 333 Pfam Ankyrin repeats (3 copies) 216 298 IPR002110 GO:0005515
Lja1g5479 333 Gene3D - 239 327 IPR036770 -
Lja1g5479 333 ProSiteProfiles Ankyrin repeat profile. 267 299 IPR002110 GO:0005515
Lja1g5479 333 SUPERFAMILY Ankyrin repeat 160 312 IPR036770 -
Lja1g5479 333 ProSiteProfiles Ankyrin repeat region circular profile. 201 233 - -
Lja1g5479 333 MobiDBLite consensus disorder prediction 81 109 - -
Lja1g5479 333 Gene3D - 130 238 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5479 185 308 Ion Channels AT2G25600 28.387 2.25e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5479 - - lja:Lj0g3v0067589.2 626.32