Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5478 ATGGGCATGGATTACTACAACGTGTTGAAGGTGCATCGAAACGCGAGCGATGAGGATTTGAAGAAAGCGTACAAGAGGCTCGCGATGAGTTGGCACCCTGACAAAAACCGTGACAAAAAAATCGAAGCCGAAAACAAGTTCAAGCTCATCTCTGAAGCTTACGACATTCTCAGCGACCCGCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGATTCTCAAGTCCGGTCAGTTTCCGCCGCCATCATCTGCTGCTTCATCCTCACGCGCCGCCGCGTACCGCAACCACCACTACCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCAACAGCGTCAGAACGCCACCTCGGGGTTCCGGTTCAACCCGCGCGATGCTGATGATATTTACGCTGAGTTCTTTGGGTCTGATGGCGCCGACGCTGGTGGCGGGCCGTCGCGGAGGGATAGTTTCTTTAGGACCTCGAATGGCGGTGCTGCGTTTGGCGGCGGACCGGCTAGGAAGGCGCCTGCTGTGGAGAACGCGCTGCCGTGTAGCTTGGAAGACCTTTGCAAAGGTGTCATGAAGAAGATGAAGATTTCGAGGACTGTCTCTGATTCTTATGGCAATTGCCGGAATGTGGAGGAGATCTTGACTATTGAGGTAAAACCTGGCTGGAAGAAAGGAACGAAGATTACCTTCCTGGAGAAGGGTAACCATGAGCCTGGTGTCATCCCTGCAGATCTAATTTTCGTGATAGATGAGAAACCACATGCTGTTTATAGAAGGGAGGGTAATGATCTGGTGATTAACCAGGAGATTACACTTCTTGAGGCCCTTACAGGTAAAACCTTGAATCTCACTACCTTGGATGGAAGGAGTCTATCGATCCCATTGACAGATATTGTCAAACCTGGTGCTGATGTCGTTGTCCCTAATGAAGGGATGCCGATATCAAAAGAGCCTGGGAAGAAAGGGAATTTAAAAATTAAGCTGGACATCAAGTATCCTTCAAGGCTTACTGCAGAGCAGAAATCTGATCTGAGGAGAGTTTTAGGTGGAATCTCATGA 1056 0.5 MGMDYYNVLKVHRNASDEDLKKAYKRLAMSWHPDKNRDKKIEAENKFKLISEAYDILSDPQKRQIYDLYGEEILKSGQFPPPSSAASSSRAAAYRNHHYQQQQQQQQQQQQQQRQNATSGFRFNPRDADDIYAEFFGSDGADAGGGPSRRDSFFRTSNGGAAFGGGPARKAPAVENALPCSLEDLCKGVMKKMKISRTVSDSYGNCRNVEEILTIEVKPGWKKGTKITFLEKGNHEPGVIPADLIFVIDEKPHAVYRREGNDLVINQEITLLEALTGKTLNLTTLDGRSLSIPLTDIVKPGADVVVPNEGMPISKEPGKKGNLKIKLDIKYPSRLTAEQKSDLRRVLGGIS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5478 351 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lja1g5478 351 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lja1g5478 351 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lja1g5478 351 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lja1g5478 351 SUPERFAMILY Chaperone J-domain 3 82 IPR036869 -
Lja1g5478 351 Pfam DnaJ C terminal domain 175 332 IPR002939 -
Lja1g5478 351 MobiDBLite consensus disorder prediction 136 157 - -
Lja1g5478 351 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lja1g5478 351 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 350 - -
Lja1g5478 351 MobiDBLite consensus disorder prediction 77 123 - -
Lja1g5478 351 CDD DnaJ 4 59 IPR001623 -
Lja1g5478 351 Gene3D DnaJ domain 1 80 IPR036869 -
Lja1g5478 351 Gene3D - 253 333 - -
Lja1g5478 351 PANTHER BNAA06G20720D PROTEIN 2 350 - -
Lja1g5478 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 341 IPR008971 GO:0006457|GO:0051082
Lja1g5478 351 MobiDBLite consensus disorder prediction 80 122 - -
Lja1g5478 351 CDD DnaJ_C 178 335 - -
Lja1g5478 351 SMART dnaj_3 3 62 IPR001623 -
Lja1g5478 351 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lja1g5478 351 Pfam DnaJ domain 4 67 IPR001623 -
Lja1g5478 351 Gene3D - 172 251 - -
Lja1g5478 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 176 253 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5478 Lja-Chr1 93729235 93732819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5478 5 74 C2H2 Transcription Factor Family AT1G74250 35.135 6.82e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5478 K09510 - gmx:100819472 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5478 1 93729235 93732819 Lja1g5478 1 93729235 93732819 ECH