Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5477 ATGGGAAACTGCAACGCGTGCGGTAGAGCTGACGTGGTGGACGGAAACACCACCACCACCACCACAACCGCCGCAACCACCACCACCAAACCAACCGACCCGAACCGGAAAAAGGAGCCAAACCACAAAAAACCAAACCCACGCGTTGACGAACCGGTCCGGTCAGCGGCCCCGATCCGCGTCCTGAGGGACGTGATTCCGATGAGCCACCGTACCAGAATCAGCGACAAGTACATACTCGGCCGTGAACTCGGCCGCGGCGAGTTCGGGATCACCTACCTCTGCACAGACCGGGAAACCAAGGAAGCTTTAGCCTGCAAGTCGATCTCGAAGCGGAAGCTTCGAACGGCGGTGGACATCGAAGATGTCCGCCGCGAGGTGGCGATCATGTCCACGCTGCCGGAGCACCCTAACATCGTGAAGCTCAAGGCGACCTATGAGGACAACGAGAATGTTCACCTCGTTATGGAGCTTTGCGAGGGTGGTGAGCTGTTCGACCGGATTGTTGCTAGGGGGCACTACAGCGAACGCGCCGCCGCGAGCGTGGCGCGTACCGTTGCTGAAGTTGTGAGGATGTGTCATGCCAATGGGGTTATGCATAGGGACCTTAAGCCGGAGAATTTTCTATTTGCTAATAAGAAAGAGAATTCGCCTCTCAAGGCTATTGATTTTGGTCTTTCAATCTTCTTCAAGCCTGGTGATAAGTTCAAGGAGATTGTTGGAAGTCCTTACTATATGGCACCAGAAGTTTTGAAGAGGAATTATGGTCCAGAAATTGATGTGTGGAGTGCTGGTGTGATTCTCTATATTTTGTTATGTGGGGTTCCTCCATTTTGGGCAGAGACTGAGCAAGGTGTGGCTTTAGCAATTTTGAGGTGTGTGATTGACTTCAAGAGGGAACCTTGGCCTCAGATATCGGGTAGTGCTAAAAGCCTTGTGCAGGGAATGCTAGAGCCGGATCCGAAAAAACGCTTGACAGCTGAACAGGTTCTTGGACATCCCTGGCTGCAAAACGCGAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCCAGGCTTAAACAGTTTTCCATGATGAATAGATTCAAAAAGAAAGCTCTACGGGTGATTGCGGAGCATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTATCATATGAGGAGCTAAAGGCTGGGTTGAGGAAGGTTGGTTCACAATTGGCTGACCAAGAGATAAAGATGCTCATGGAAGTGGCCGATGTTGATGGGAATGGAGTACTTGACTACGGTGAGTTTGTAGCTGTTACGATTCACTTGCAAAAAATGGAGAATGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGACAAGGACGGGAGTGGGTATATTGAGTCAGGTGAGCTACAAGAAGCATTAGCAGATGAGTCAGGAGTAACTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACCGACAAGGATGGTCGCATAAGTTATGAGGAGTTTGTGGCCATGATGAAAGCTGGAACTGACTGGAGAAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGCTTGAGCCTAAATTTGATGAAGGACGGCTCACTCCAACTTCATGATGGAATTAGTGGTGAAGCTGTTGTGGTCTGA 1683 0.486 MGNCNACGRADVVDGNTTTTTTTAATTTTKPTDPNRKKEPNHKKPNPRVDEPVRSAAPIRVLRDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDIEDVRREVAIMSTLPEHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAASVARTVAEVVRMCHANGVMHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGDKFKEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAETEQGVALAILRCVIDFKREPWPQISGSAKSLVQGMLEPDPKKRLTAEQVLGHPWLQNAKKAPNVPLGDIVRSRLKQFSMMNRFKKKALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVSYEELKAGLRKVGSQLADQEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIESGELQEALADESGVTDADVLNDIMREVDTDKDGRISYEEFVAMMKAGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGISGEAVVV* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5477 560 MobiDBLite consensus disorder prediction 1 52 - -
Lja1g5477 560 Gene3D - 345 520 - -
Lja1g5477 560 Gene3D Transferase(Phosphotransferase) domain 1 164 344 - -
Lja1g5477 560 SUPERFAMILY EF-hand 364 543 IPR011992 -
Lja1g5477 560 Gene3D Phosphorylase Kinase; domain 1 79 163 - -
Lja1g5477 560 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Lja1g5477 560 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Lja1g5477 560 CDD STKc_CAMK 77 335 - -
Lja1g5477 560 Pfam EF-hand domain pair 454 517 IPR002048 GO:0005509
Lja1g5477 560 Pfam EF-hand domain pair 384 443 IPR002048 GO:0005509
Lja1g5477 560 ProSitePatterns EF-hand calcium-binding domain. 500 512 IPR018247 -
Lja1g5477 560 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5477 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lja1g5477 560 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Lja1g5477 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 536 - -
Lja1g5477 560 ProSiteProfiles EF-hand calcium-binding domain profile. 487 522 IPR002048 GO:0005509
Lja1g5477 560 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Lja1g5477 560 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Lja1g5477 560 SUPERFAMILY Protein kinase-like (PK-like) 75 344 IPR011009 -
Lja1g5477 560 MobiDBLite consensus disorder prediction 32 50 - -
Lja1g5477 560 PANTHER BNAA09G44420D PROTEIN 27 536 - -
Lja1g5477 560 Pfam Protein kinase domain 80 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5477 560 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5477 560 MobiDBLite consensus disorder prediction 12 31 - -
Lja1g5477 560 SMART efh_1 491 519 IPR002048 GO:0005509
Lja1g5477 560 SMART efh_1 419 447 IPR002048 GO:0005509
Lja1g5477 560 SMART efh_1 455 483 IPR002048 GO:0005509
Lja1g5477 560 SMART efh_1 383 411 IPR002048 GO:0005509
Lja1g5477 560 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Lja1g5477 560 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5477 Lja-Chr1 93719063 93724328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5477 1 560 EF-hand Containing Proteins AT1G18890 80.179 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g5477 Pkinase 1.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5477 K13412 - gmx:100809838 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5477 1 93719063 93724328 Lja1g5477 1 93719063 93724328 ECH