Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5476 ATGGCGATGGCTGCTGCTCTTCGACGCGAGGGGAAGCGTTTGGCTCCTCTCATCTCTCCCCTACCAATCCGATCCTCTCCCATTTCTCCAGACCAAACCCTCAATGGATTCCGCTCCATTTCAACTCAAATTGTTCGAAACCGGATGAAGAGTGTCAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCGTCTAAGCTACGCGCTGTTCAAACCAGAGCTGAAAATTCACGTGGGTTGTGGCAGCCCTTCACGGCCCTTCTGGGTGATGCTACAAGTGTTGACGTCAAGAAGAACGTCATTGTTACCGTTTCATCTGACAAAGGTCTTTGCGGTGGAATCAATTCCACATCCGTGAAGATAAGCAGGGCTTTAAGCAAATTGAATGCGGGGCCTGATAAAGAGACAAAGTATGTCATATTGGGCGAGAAAGCTAAAGCTCAGCTGATTCGTGACTCCAAGCAAGACATTCTGCTCTCATTAACTGAGTTGCAGAAAAATCCTCTGAATTACACTCAGGTGTCAGTCTTGGCAGATGACATTCTAAAGAATGTTGAGTTCGATGCATTGAGGATCGTGTTCAACAAATTTCATTCAGTTGTACAGTTTTATCCAACTGTGTCAACTGTACTATCTCCTGAGATTGTCGAGAGAGAGACTGAATCTGGAGGAATGCTTGGGGAATTGGATTCATATGAGATTGAAGGTGGTGATTCAAAATCAGAAATTCTTCAGAATCTGTCTGAGTTCCAGTTTTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCTATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACCTATAACAGAACTCGTCAAGCATCAATTACCACTGAATTGATTGAGATTATCTCTGGAGCTTCAGCGCTGGAAGGTTAA 963 0.4538 MAMAAALRREGKRLAPLISPLPIRSSPISPDQTLNGFRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGLCGGINSTSVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSLTELQKNPLNYTQVSVLADDILKNVEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELDSYEIEGGDSKSEILQNLSEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5476 320 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 318 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 Gene3D - 65 277 - -
Lja1g5476 320 Gene3D ATP synthase, gamma subunit, helix hairpin domain 45 315 - -
Lja1g5476 320 PRINTS ATP synthase gamma subunit signature 191 208 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 PRINTS ATP synthase gamma subunit signature 296 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 PRINTS ATP synthase gamma subunit signature 99 118 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 PRINTS ATP synthase gamma subunit signature 265 284 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 ProSitePatterns ATP synthase gamma subunit signature. 304 317 IPR023632 -
Lja1g5476 320 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 41 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 CDD F1-ATPase_gamma 41 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 Hamap ATP synthase gamma chain [atpG]. 39 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 Pfam ATP synthase 43 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 PANTHER ATP SYNTHASE GAMMA CHAIN 1 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja1g5476 320 PIRSF ATP_synthase_gamma 15 318 - -
Lja1g5476 320 PANTHER BNAA05G10580D PROTEIN 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5476 Lja-Chr1 93681492 93686342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5476 13 318 Primary Pumps ATPases AT1G15700 28.611 1.29e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5476 K02136 - gmx:100813657 530.02