Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5475 ATGGAAACGTCATGTGAAGATCAGATTGACAGAGAACAGTATTGGACGGCGAAGGTTTCGGTATGGTGGGACATGGAATACTGCCAACTCCCCAACGATTTAGAACCAAACTTCATTGCAATGAATATCAAATCCGCCCTTATCCGCACGAACTATATTGGCCCTATTTCCTTCTTCGCGTACGGCGACACCACGCGCATCCCCCTCACTGTACAACGCGCTCTCGCCGCCACTGGAGTCTCCCTCATCCATATGTCGCCCGCAATGGAAACATTATGTGAAGATTGTGTTGCGGATCAAATTGACAGTGGTGTGAACCCGACTGAGGCCCAGTATTGGACGGCAAAGGTTTCGGTATGGTGGGACATGGAATACTGCCAAGTTTGCGACGTTTTAGAAGCACGCGCCATTGCAAAGAACATCAAATCTTCCCTCGTCCACATGAACTATAGGGGCCCTGTTTCCATCTTCGCCTACGGCGACACCACGCGCATCCCCCTTTCTGTACAACAAGCTCTCTCCAGCACCGGAGTCTCCCTCATCCCTATTTCGCTCAGTCGCACGAGGCTCGTTTTGGACATGTTGTTATGGGCAAAGGACAATCCCACACCTGCTAATTATTTATTAATTTCGGGTGATGGAGACTTTGGTGACGTTCTCCATTATCTAGGGATGTTGAGATATAATGTTCTTCTTGCACTGCCTCAGCAAGCAGCATCTGAACCTCTGGTTACAGCTGCCAAGACCGTATGGCTCTGGACTACTCCAATTTCGCGTGGTGCTCCCATGACGAATGCCCTTATGATACAGCAACATGCAGAGTCAGAAAATTCAAAATTACCAATTGCAGAAAGGGAATTTGATTCAAATATGTCTGGACAAGATTTCATTATTCTGCCGCCAGCGGGCCTTCGAGATCAACTAGTGCTCATATCGATTGTTGTATCTACCTTGGGGTCACTAGAAATTGGAAAGTTGTTACCCACGGAAACGAACATAACTAATTACATCCGTTATGGAGATGTCAATCACCGGAATATTGATGTTAAGAAGGCTCTTGAGTGTGCTATTGAGAGGAAAATTATAACGAAACAAATTTTAGTTGAAGGTGTTTTAACATTGTATGTGGGAAAGCATCAGAAACCTTGGGAGTGTCTCAATCCTTTAGGGGGTAAACTTAAGCAGCAAACGAAAAAAAAAAGATGGGTAAAAATTCAGGATTTTTTAACAACTGATGAAGGAAACTTATGCTTTGGCGGGTGCTTCAATGGGTCTTCATGTCTTGCCCCAATTTGTCTGGTTTGGGATGTTTTGTCGGTGATGGAGAAGGAAGAAGGGGAGTTGGGGGTGATGGTGGTGGATTTTTCATGA 1371 0.4559 METSCEDQIDREQYWTAKVSVWWDMEYCQLPNDLEPNFIAMNIKSALIRTNYIGPISFFAYGDTTRIPLTVQRALAATGVSLIHMSPAMETLCEDCVADQIDSGVNPTEAQYWTAKVSVWWDMEYCQVCDVLEARAIAKNIKSSLVHMNYRGPVSIFAYGDTTRIPLSVQQALSSTGVSLIPISLSRTRLVLDMLLWAKDNPTPANYLLISGDGDFGDVLHYLGMLRYNVLLALPQQAASEPLVTAAKTVWLWTTPISRGAPMTNALMIQQHAESENSKLPIAEREFDSNMSGQDFIILPPAGLRDQLVLISIVVSTLGSLEIGKLLPTETNITNYIRYGDVNHRNIDVKKALECAIERKIITKQILVEGVLTLYVGKHQKPWECLNPLGGKLKQQTKKKRWVKIQDFLTTDEGNLCFGGCFNGSSCLAPICLVWDVLSVMEKEEGELGVMVVDFS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5475 456 PANTHER LIMKAIN B LKAP 308 416 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lja1g5475 456 PANTHER LIMKAIN B LKAP 105 275 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lja1g5475 456 PANTHER LIMKAIN B LKAP 12 88 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lja1g5475 456 CDD PIN_limkain_b1_N_like 116 235 - -
Lja1g5475 456 Pfam NYN domain 116 248 IPR021139 GO:0004540
Lja1g5475 456 Pfam NYN domain 18 85 IPR021139 GO:0004540
Lja1g5475 456 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 308 416 - -
Lja1g5475 456 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 105 275 - -
Lja1g5475 456 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 12 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5475 Lja-Chr1 93661969 93668859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5475 14 85 C2H2 Transcription Factor Family AT5G61190 51.389 6.64e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5475 - - lja:Lj0g3v0345639.1 267.314