Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5469 ATGGCTTTATTTGGAAGAGTTGGGAATATACTAAAGCAAGCAACGACTAGGAAGATCAATTCAGAGTTATGTTCATTCCCATCTGGTTTCCAGGCTATAGGGTGCTTTTCAAATTCTCCAAGTACTAAGCTGTTCATAGGAGGTGTTTCATATAATACTGATGACCAAAGTTTGGAGGAAGCTTTCTCAAAATATGGTCAAGTTCTTGATGCTAGGATAATTAAGGATCGCGAGTCCGGTAGGTCAAGAGGATTTGGTTTTGTTACTTTCTCTACTCTTGAGGAGGCATCAAGTGCCATTCAGGGAGTGGATGGACAGGATCTACATGGTCGTCAGGTTAAGGTAAATTTTGCTAATGAAAGACCCCGTGCATATCCAGGTAGTTACGGTAACTCTCCATATGGGAATGCCGGTGGCAATGCGACTGGAGTTTTAAATACTACTGGATATCCTGGAGATGTCTATGAATCGGATAGCAATCCTGGTAACCGTGCTGGCAATAACTATGGTACTGATGACAATACCAGAAGTTCTGGTGGTGGTTATGGTTATGGCAGCTTTCCTAGTGGAAACACTTACAATGATGGAACTAGTGGAGGTTACTGTGTCAACAATGGAAATTATGCTGCTGCTGCGGGTGTTGGAGAGAGTAATACTGTTAACTATGGTAGTGCTCCTGGTGGTGGTTATGGTAACTACGGCACTGCTGCGCCCGGAATTGGCAATCGTTATAATTATGACAATTCTGCTGTATTTGGCAGCAGTGGTAATAATTTTAATGTTGCTGGTGGTGGCAGCAGCAGTGAATACCCTGGAAGTGCCATGGGGTATGGTACCTTTGGTATGGGTACTGGTGGTGACTTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGATGTGCTTAA 909 0.4422 MALFGRVGNILKQATTRKINSELCSFPSGFQAIGCFSNSPSTKLFIGGVSYNTDDQSLEEAFSKYGQVLDARIIKDRESGRSRGFGFVTFSTLEEASSAIQGVDGQDLHGRQVKVNFANERPRAYPGSYGNSPYGNAGGNATGVLNTTGYPGDVYESDSNPGNRAGNNYGTDDNTRSSGGGYGYGSFPSGNTYNDGTSGGYCVNNGNYAAAAGVGESNTVNYGSAPGGGYGNYGTAAPGIGNRYNYDNSAVFGSSGNNFNVAGGGSSSEYPGSAMGYGTFGMGTGGDFGGGGGGGGGDGGCA* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5469 302 MobiDBLite consensus disorder prediction 160 182 - -
Lja1g5469 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Lja1g5469 302 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 285 - -
Lja1g5469 302 SUPERFAMILY RNA-binding domain, RBD 38 139 IPR035979 GO:0003676
Lja1g5469 302 Gene3D - 36 145 IPR012677 -
Lja1g5469 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Lja1g5469 302 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 285 - -
Lja1g5469 302 MobiDBLite consensus disorder prediction 148 182 - -
Lja1g5469 302 SMART rrm1_1 43 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5469 Lja-Chr1 93545998 93547824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5469 44 217 Eukaryotic Initiation Factors Gene Family AT4G34110 26.857 1.83e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5469 K12741 - ccaj:109815980 232.646