Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5466 ATGGCAAGTTCAAGAGAAGTTCACGAATCGAAGCAAGAGGGTGATGATGAAACATTTAACATCCCGAGACTCACCAAGGCATCGTCTTCTTCTATTCCAAGACAATGGTCAGGCTTCAAGAACCCGAGAATCGTTCGAGTGTCGCGTTCTTTTGGAGGAAAAGACAGGCACAGCAAGGTTTGCACCATAAGAGGATTGAGGGACAGAAGGATCAGGCTCTCAGTTCCGACCGCAGTTCAGCTCTATGACCTTCAAGACAAGCTTGGCCTAAACCAGCCAAGCAAAGTGGTAGATTGGTTGCTCGAAGCCACGAAACTCGACATAGATAAGCTCCCTCCACTTCAATTCCCACAGGGCTTTTCTCAATTTCATGATTCATCAAATGCCTCAGATCTTTCTCTTGGACCCTTCTATGATTATACCAATAATTTCATGGCGAAGTCAAGGTTTTCATGGGATTTGGATTCAATGTCTAGAGTTAATAAAGGGAAGGAGGCTGCAGAAAGAGGAAAGTGGATCAAAACAAGTTATGATCATGAAAATCGTGATGGGGTTATTGGATCAGTTGGAGTTGGAGGTGGTTATAACAACAGCTTTCAGGTTTCAACTCAGAAGCTTTTCCCCAATACCATGTCATATAATAACAATAACTACCACTCATCAGAGCCTTCAAGTCTGTCTTTATCCCAATTTGGGAGCCATGGTGGGTTGTTTCATTCACATTCACAGCTAGATCCTTCTCACCCAAGCAGTGTGCAATTTCCATCTTCTAATCTACCTCTACTTTCTGGTTCCCAATTCTTGTTTGCTCCAACATCTTCTGTGCCTACACCACCATCATTTTTCACTCCTTTTATGACCACTACTACTACTTCAGTGGAAAATGATCCAAGACAGTTCAACCACTTTCAGTTCCTGAACTCATCAGGTTCCTCTCAACATTTGCCCCATCCTCTCTTTCCATCTTTACACTCTCTCAATTCAACACCTATCAGGCCCTTCGCAACACCATTTAACTCGAAGCTTCTTGATTCTAATAATGATAATAAAGACAGTAACACTCGTTCTTGA 1071 0.4267 MASSREVHESKQEGDDETFNIPRLTKASSSSIPRQWSGFKNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYDLQDKLGLNQPSKVVDWLLEATKLDIDKLPPLQFPQGFSQFHDSSNASDLSLGPFYDYTNNFMAKSRFSWDLDSMSRVNKGKEAAERGKWIKTSYDHENRDGVIGSVGVGGGYNNSFQVSTQKLFPNTMSYNNNNYHSSEPSSLSLSQFGSHGGLFHSHSQLDPSHPSSVQFPSSNLPLLSGSQFLFAPTSSVPTPPSFFTPFMTTTTTSVENDPRQFNHFQFLNSSGSSQHLPHPLFPSLHSLNSTPIRPFATPFNSKLLDSNNDNKDSNTRS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5466 356 Pfam TCP family transcription factor 53 155 IPR017887 -
Lja1g5466 356 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5466 356 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g5466 356 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 354 IPR005333 GO:0003700
Lja1g5466 356 ProSiteProfiles TCP domain profile. 53 111 IPR017887 -
Lja1g5466 356 MobiDBLite consensus disorder prediction 337 356 - -
Lja1g5466 356 PANTHER TRANSCRIPTION FACTOR TCP17 3 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5466 Lja-Chr1 93394272 93395342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5466 37 282 TCP Transcription Factor Family AT5G60970 43.542 3.09e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja1g5466 TCP 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5466 - - cam:101498052 324.709