Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5458 ATGAAATATCAGCTGCTTCTATTTGTTTCTGTTGCTATTGTGACAATGTACAACTTTCAACAGTATCGCCATATTCAGGCCCCTGGATGGTCATTAGGGTGGACATGGGCAAGAAAGGAAGTAATTTGGAACATGGTGGGAGGCCAAACCACAGAACAAGGAGACTGTTCAAAGTTCAAAGGCAGCTTACCACATTGTTGTAAGGAGGATCCAACAGTAGTGGACTTATTGCCAGGAGATCCAAGCAGAGCAGTGAGCTCATTTCAGTTGACTGTCGGATTGTCGGGAACAAGTAACCAGACAATTAAACTACCTAACAAATTCACCCTAAAAGCACCAGGACCTGGTTACACTTGTGGTCCTGCGAAGCATGTGGCTCCAACAAAATATTTTTCCAATGACATGAGGAGATTCATCCAAGCCTTTATGACCTGGGAGGTTTCCTGCACATATTCACAATTCCTGGCTCAGAGGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTACAATGATTCTATAGTGAACTGCCCAACCTGCACGTGTGGCTGCGAAAACAAAACGGATCCTGGAAGCTGTGTAAATCCAAACTCCCCACACTTGCCTTCACTTGTATCATCAAGCAATGATTTAACTACACCTCTAGTCCAGTGTACCAGCCATATGTGTCCCGTTCGAGTGCATTGGCATGTGATGGTTAATTATAAAGAGTACTGGAGGGTCAAGGTTACAGTCACAAATTTTAACTACAGAGTGAACTATTCAGATTGGGACCTTGTTGTGCAGCATCCCAATTTCAATAATGTTACCCAAATTTTCAGCTTCAATTACAAGTCCCTAACCCCATATGATGGTTTTAATGATACCGGCATGCTGTGGGGATTGAAGAACTATAATGAGGATCTTTCTTCACCTTCGAAAGGAAGTGTTGGCTATGTGCAGTCAGAAATTTTATTTGGGAAGAATAGATCAACCTTCACATTTCATGCGGGATGGGCCTTCCCAAGAAGATTGATTTTCAACGGTGATGAGTGTGTGATGCCTCCACCAGATATCTATCCTCAGCTGCCAAATTCATGCTCAAGACTTGTATCATCAATCCTAAGTATAGTCATGGGCACTTTGGCATATTTTGTAATCTTCTAG 1146 0.4276 MKYQLLLFVSVAIVTMYNFQQYRHIQAPGWSLGWTWARKEVIWNMVGGQTTEQGDCSKFKGSLPHCCKEDPTVVDLLPGDPSRAVSSFQLTVGLSGTSNQTIKLPNKFTLKAPGPGYTCGPAKHVAPTKYFSNDMRRFIQAFMTWEVSCTYSQFLAQRTPSCCVSLSSFYNDSIVNCPTCTCGCENKTDPGSCVNPNSPHLPSLVSSSNDLTTPLVQCTSHMCPVRVHWHVMVNYKEYWRVKVTVTNFNYRVNYSDWDLVVQHPNFNNVTQIFSFNYKSLTPYDGFNDTGMLWGLKNYNEDLSSPSKGSVGYVQSEILFGKNRSTFTFHAGWAFPRRLIFNGDECVMPPPDIYPQLPNSCSRLVSSILSIVMGTLAYFVIF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5458 381 Pfam COBRA-like protein 80 152 IPR006918 GO:0010215|GO:0031225
Lja1g5458 381 Pfam COBRA-like protein 11 81 IPR006918 GO:0010215|GO:0031225
Lja1g5458 381 PANTHER PROTEIN COBRA 11 377 IPR006918 GO:0010215|GO:0031225
Lja1g5458 381 PANTHER COBRA-LIKE PROTEIN 11 377 - -
Lja1g5458 381 PIRSF COBRA 3 84 IPR006918 GO:0010215|GO:0031225
Lja1g5458 381 PIRSF COBRA 79 381 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5458 Lja-Chr1 92870761 92872781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5458 11 362 COBRA Gene Family AT5G60920 65.782 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5458 - - gmx:100815779 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5458 1 92870761 92872781 Lja1g5458 1 92870761 92872781 ECH