Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5457 ATGGAGTCTATGAGGTTATCTACAATTGGATCTCGTGGTGGCTTGCCATTCTTGCTCCTGTTGGTGCTTTCTTGCTCCACATTCACTTCTACAGAAGCCTATGATGCACTTGATCCAACTGGCAATATAACAATTAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATGTTGCTACTGTTACAATGTACAACTTTCAACAGTATCGTCATATTCAGGCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGAAGTAATTTGGAACATGATGGGAGGCCAAACTACAGAGCAAGGAGATTGTTCGAAGTTCAAAGCCGGCATACCACATTGTTGTAAAAAGGATCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGGTTGCAAATTGTTGCAAAGGTGGAGTCTTAAATTCTTGGGCTCAGGATCCAGGCAATGCAGTGAGTTCTTTTCAGATTAGTGTTGGCTCTGCCGGAACAACTAACAAAACGGTCAAATTGCCCAAAAATTTCACCCTCAAAGCACCAGGACCTGGCTATACTTGTGGCCCTGCAAAAAATGTGAGACCGACTAAATATATTACCAGCGACAAGAGGAGAATCACCCAAGCCTTGATGACCTGGAATGTTACATGCACATATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACTCTATTGTAAACTGCCCAACCTGCACGTGTGGCTGCAAAAACAAAACAGATCCTGGAAGCTGTGTTAATCCAGACTCCCCACATTTGTCTTCTGTTGTATCATCATCATCAAGCAAAGATATAAATACACCTCTAGTCCAGTGTACCAGTCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAGCTTAATTATAAAGAGTACTGGAGGGTCAAGATCACTATTACAAATTTCAACTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCACCCCAATTTTGATAATCTTACCGAGATTTTCAGCTTTCAATACAAGTCACTAACACCCTATGAGGGCTTAAATGATACCGGTATGCTGTGGGGAACGAAGTTCTACAATGATTTTCTTTCTTCAGCTTCTGAAAAAAATCTTGGTAATGTGCAGTCAGAAATCTTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAGGGATGGGCCTTCCCAAGAAGGATTTATTTCAACGGCGATAACTGTGTTATGCCTCCACCAGATGCCTATCCTTGGCAACCAAATGCAAGTTCGAAACTAGCTTTCTCTCTACTATGTACAGTCATGGCCACTTTGGCATATTTGGTAATCTTATTAAACTAA 1362 0.4178 MESMRLSTIGSRGGLPFLLLLVLSCSTFTSTEAYDALDPTGNITIKWDVISWTPDGYVATVTMYNFQQYRHIQAPGWSLGWTWAKKEVIWNMMGGQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQVANCCKGGVLNSWAQDPGNAVSSFQISVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKNVRPTKYITSDKRRITQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDSIVNCPTCTCGCKNKTDPGSCVNPDSPHLSSVVSSSSSKDINTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNFDNLTEIFSFQYKSLTPYEGLNDTGMLWGTKFYNDFLSSASEKNLGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLCTVMATLAYLVILLN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5457 453 PIRSF COBRA 12 453 IPR006918 GO:0010215|GO:0031225
Lja1g5457 453 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Lja1g5457 453 PANTHER COBRA-LIKE PROTEIN 12 448 - -
Lja1g5457 453 Pfam COBRA-like protein 57 220 IPR006918 GO:0010215|GO:0031225
Lja1g5457 453 PANTHER PROTEIN COBRA 12 448 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5457 Lja-Chr1 92841610 92845475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5457 19 453 COBRA Gene Family AT3G02210 71.954 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5457 - - gmx:100815779 815.839