Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5456 ATGGAATTAGATAATGGTAAAAAGCAGCAAAGCTGCACATTTGAGAAGCTGAAGTTGGTTTCCTTCATTACTCTATGTCTCATTCTAATCTCTCCTGCTGACGCTTTTGATCCTTTGGATCCAACTGGGAACGTGACAATAAGATGGGACATCATGTCCTGGACATCAGATGGTTATATGGCCACTGTGACATTGTTTAACTTCCAACTGTACCGGAACATTATGAACCCTGGGTGGAATCTAGGATGGACATGGGCAAAGAAAGAAGTCATCATGGCCATGATGGGAGCTCAGGCTACAGAACAAGGAGACTGTTCCAAGTTCAAGTTGAAGATTCCTCACAGCTGCAAGAGGAACCCCCAAGTGGTTGACTTGCTACCAGGAGCATCTTTCAACATGCAGTACACCAACTGCTGCAAAGGGGGTGTGCTAACATCCTGGGGTCAGGACCCTTCAGGTACTGTCTCAGCATTTCAGATGGCTGTGGGGCTCTCTGGAACCTCTAACAAGACAGTGAAACTCCCCAAGAACTTCAAATTGCTTGGACCAGGACCAGGTTACTCATGTGGCCCTGCAAAGATGGTTCCATCCACTGTAATCCCCACAGATGATCACAGGAGAAAAGCTCAAGCTTTGATGTCCTGGAATGTGACATGTACCTATTCACAGTTTCTTGCCTACAAGAATCCAAGCTGCTGTGTTTCTTTGTCATCTTTCTACAATGATAAAGTGACAGCTTGCCCAACTTGTGCTTGTGGTTGCCAGAATAATGATACTTGTGTGACGAGTGATTCAAAGATCCTGCAAGAAAATACAACTAAGACACATAAGACAGATATCACACCAAAACCATTGCTAAGATGCACACACCACCTGTGTCATGTTCGGGTGCACTGGCACATTAAAGAAAACTACAAGGACTATTGGAGGGTCAAGATTGCCATCATCAATTTCGACTATCGAATGAACTACACTCAATGGTCTCTTGTTGTACAACATCCCAATCTCAATAATGTCACCCAAGTCTATAGCTTTGAGTACTTGCCACTTCTTCCATATCAGGCCATAAATGATACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTATTGATGGAAGCTGGGCCTAAGGGGAATGTTCAGTCTGAGGTGCTTATGAAGAAGGACAAGAACACATTTACACTTAAGCAGGGATGGGCATTTCCTAGGAGGGTCTACTTTAATGGTGATGAATGCATGCTGCCACCTCCTGATTCATACCCTTTCTTGCCAAACTCTGCTCATAGATTACCAAGTACTGTTTTGATGGCAGCCTATGTCATTTTCACATCATTTTTTCATTTTGTTGTGAGTCTTCTGTGA 1365 0.4344 MELDNGKKQQSCTFEKLKLVSFITLCLILISPADAFDPLDPTGNVTIRWDIMSWTSDGYMATVTLFNFQLYRNIMNPGWNLGWTWAKKEVIMAMMGAQATEQGDCSKFKLKIPHSCKRNPQVVDLLPGASFNMQYTNCCKGGVLTSWGQDPSGTVSAFQMAVGLSGTSNKTVKLPKNFKLLGPGPGYSCGPAKMVPSTVIPTDDHRRKAQALMSWNVTCTYSQFLAYKNPSCCVSLSSFYNDKVTACPTCACGCQNNDTCVTSDSKILQENTTKTHKTDITPKPLLRCTHHLCHVRVHWHIKENYKDYWRVKIAIINFDYRMNYTQWSLVVQHPNLNNVTQVYSFEYLPLLPYQAINDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPFLPNSAHRLPSTVLMAAYVIFTSFFHFVVSLL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5456 454 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Lja1g5456 454 PANTHER COBRA-LIKE PROTEIN 1 453 - -
Lja1g5456 454 PIRSF COBRA 9 453 IPR006918 GO:0010215|GO:0031225
Lja1g5456 454 PANTHER PROTEIN COBRA 1 453 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5456 Lja-Chr1 92838445 92841364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5456 11 448 COBRA Gene Family AT3G02210 57.466 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5456 - - gmx:100813134 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5456 1 92838445 92841364 Lja1g5456 1 92838445 92841364 ECH