Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5455 ATGACACTTAGAAAAAGAAATTTGCATCAAGTGAAGCATCCATTCAATGCTTTTTTGTTTGGCTCATGGAAACCCGTGAAGTTCATTAGAATTGAATCAAGAAGGGTGACCTTTCATTTTAGAAAGCCCCACAACCCTGAATGCTCATGTGAGTATCGTGTAATCTTTTATACAAATCAAGGTTCCCTTGAACAAAATCAAAATACTCTGAGTAAGGATTTCAAAGTAGTTGGGTTAAATCAATTTTCTATCCTTCAAAGGCTTGGACGTAAAAGCCTTGAAGATCAACCATTTAGGTGGAACTCATCAGAAAACTGCACCAAGAGACCACAAACGAGGTTTTCCTTAAGAAATTTCGCCTGCGACATGTCATTGCTAGCTGGTTTATCACTTCTAAAGAACATGTCCTTATGTGCGAGATCAGAGCAAAATAAGATTCTCTACCAAATCATGGAAAATGATACTAGTAACTCTGATTTTCCCATAAAAGCTATGAACTTCAAACTAAAAGGTGGCAAATCAATGCCCTCTATTTTTGAACTTGATACATGGAGTATTGTCCTTGCAATGCAAAATTATGAAGTACAGGTGTTGCCACCATTACAACGTTTGACAGGTCGAATCAAGAATCCTGAATTTTACTTGGGCTATTGTGATGTTGGTTCAAGTTCTGTAATTCAAAATCGGAAATATAAGGTGGACACGAGGAAAAATGATGACAAGTTGGCACTAGTGAATTACACTGCTGAAGGGGATGTTGAAACTAGTGTTCAAAAGTTTTGTGAATCTGATGCCATCGAAAATGAACATATAAAACCAATTTCTATTGTTCTAGCTCCTAAGAAAGGTGGTTTAGAGGCTCTTGAACCCCGCAATCTCCATGAAAGTGGTCAATTTTCTTCCCAGTTTGTTGATATTTGGGGATCGAACAACAATGATGATACTGGTATGTGTATAAATCAGCCTAGTGGTGATACGAAAGTAGTTGGTGCAACCTTTTCAAGACATTATTATAATCTTAGAAGCGGTAAGAAGCATCAGAGGAAGGATTCATCAAATTCAGATGATACAATGGAAGATTTGGAACCCAAATGGGAGGGGTTTAATTCTATAAGAGGAGCTGAGCGCAAGAGGCTACATGATGCATCAAAGGAAATTATATATTCTTACTTGAAGGATATTGAAAAATTACCCACAATAGAAGAGGCTCCTATTAATGAGAAATGGAATGAAGCAATCAACTTTGGCAAAGACAAGGAAACTGAGAAAATTCAAAGAGCGGAGCAGGTGGAGGAAGAAGTTTCTGAAATCGAAATGTTATGGAGAGAAATGGATGATGCAATGATAGAGGAGTGTGAGCGAAATTTTTTTCTTAATTCCTTGTTCAATTTATCAATGCAGGGTTCAAGTGCTCAACCTAAGGACGAGACTACTAGATCTTGTGAGCACGATTATAGATTGGATGAGCAACTTGGAATCTATTACCATAAATGCGGCTTTGTGAATGAAGATATAAGATATATCATGCCAGGCTTTGTTGATGATGAACCAAAGTCTGATGATCAACAAAATATTGATGATGAACCGAAGGGTGAAGATAATGATAATGATATCCCTTTGGTTCCTATATATGCTGCTTGTGATGAGCCGAAGGGTGAAGATAATGATAATGATATCCCTTTGCTTCATATATCTGCTGCTTGTGATGAGCCTATATCCATTGAAAATGACAGCGTTTGGGGATACATTCCTGAACTTAGAGAAAACATGCTCCTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTTGGGGGTCCATAAACCCAACACTTATGGAAGCACAATATGAAAACAGAGGAGGCTGTGTGATATCTCATGCTCTTGGAGCTGGAAAAACATTCCAAACCATTGTGTTTCTTGTTAGATATTTGAAGTTATTCCCAAACAAAAAACCCTTAATCCTTGCTCCAAAAACCACACTTTACACTTGGTACCAAGAGTTTATCAAGTGGAAGATTCCAATGCCAGTTTATCTGATTCACAATCGCAGAAGCCAAAGAAATTTCAGTGGAAATGCATTGTCTCTTCCTGGAATTCCCAATCCCAATGAAGATGTCAAGCATACTTTGGATTGCTTGGAAAAGATTCAAAAGTGGCATGCACACCCAAGTGTTCTGGTCATGGGTTACACTTCATTTTTGTCATTAATGCATGAAAATTCAAAGTATGAACACAAAAATTTCATGGCTAAAGCATTGAGGGAAAGTCCTGAGATTCTTGTGCTGGATGAAGGGCACAATCCAAGAAGCACCAAGTCGAAACTGAGAGTACTCCTCTCTGGCACATTGTTTCAGATTAGTTTTTGCGAGTATTTTAACACACTTTTCTTAGCAAGACCAAGGTTTGTTCATGAAGTGCTCCAAGAGTTAGATCCAAAATATGTGAAGAGCGAAGCTGAAAACAAAGGTCCCCATTTAGTCGAGTCACGAGCAAGGAAATTCTTCATTGATAAAATTGGGGTGAAAATCGATGCTGGTAATGACAATAAGAAAATCACAAGTGGTTTCATAGATGTGTATGATAGTGTGAATGCAGATAGTTTACTACGTGGTTTACAAATTTACACCTTGTTGATGAATAACACTGAGAAGCAAAGTGAAATCTTGCAGAAACTGCATAAGAAAATGAACCGGAGTGGCAGGTACCTTCTTGAGGTAGAGTTTTTGATAACCCTTGGGTCAATACATCCATGGCTTATCTCAACAACAAAATGCGCCAAAAAGTTTTTCTCTTCGAGCCAATTGAAGCAACTAGAAAAATGCAAGATTGATTTGAAAATAGGGTCAAAGGTGAAATTTGTTTTGAGCCTTGTCTTCCGTGTGGTCAAGATGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCAATGTGGCTGCTTCTGGAGTTGTTTGAGAGGTTCTTCAATTGGAAAGCAGGAACAGAGATCTTGACACTACATGGGGAACAAGAGTTGTTTCAGAGAGGGAAAGTGATAGATAAGTTTGAGGATCATTGTGGAGCCTCAAAGGTTCTCCTTGCTTCAATCAGCGCTTGTGCGGAAAGGGTTAGTTTGGCAGTAGCTTCTCGCGTGATTTTCTTGGACTCAGAGTGGAATCCGTCCAAAACGAAGCAGACTATTGCACGGGCCTTCCGTCCTGGCCAAGACAAGGTTGTTCATGTTTATCAACTATTAGCAGCTGGATCATTTGAGGAGGATAAATATAAGAAAACCAACTAG 3288 0.3869 MTLRKRNLHQVKHPFNAFLFGSWKPVKFIRIESRRVTFHFRKPHNPECSCEYRVIFYTNQGSLEQNQNTLSKDFKVVGLNQFSILQRLGRKSLEDQPFRWNSSENCTKRPQTRFSLRNFACDMSLLAGLSLLKNMSLCARSEQNKILYQIMENDTSNSDFPIKAMNFKLKGGKSMPSIFELDTWSIVLAMQNYEVQVLPPLQRLTGRIKNPEFYLGYCDVGSSSVIQNRKYKVDTRKNDDKLALVNYTAEGDVETSVQKFCESDAIENEHIKPISIVLAPKKGGLEALEPRNLHESGQFSSQFVDIWGSNNNDDTGMCINQPSGDTKVVGATFSRHYYNLRSGKKHQRKDSSNSDDTMEDLEPKWEGFNSIRGAERKRLHDASKEIIYSYLKDIEKLPTIEEAPINEKWNEAINFGKDKETEKIQRAEQVEEEVSEIEMLWREMDDAMIEECERNFFLNSLFNLSMQGSSAQPKDETTRSCEHDYRLDEQLGIYYHKCGFVNEDIRYIMPGFVDDEPKSDDQQNIDDEPKGEDNDNDIPLVPIYAACDEPKGEDNDNDIPLLHISAACDEPISIENDSVWGYIPELRENMLLHQKKAFEFLWQNIWGSINPTLMEAQYENRGGCVISHALGAGKTFQTIVFLVRYLKLFPNKKPLILAPKTTLYTWYQEFIKWKIPMPVYLIHNRRSQRNFSGNALSLPGIPNPNEDVKHTLDCLEKIQKWHAHPSVLVMGYTSFLSLMHENSKYEHKNFMAKALRESPEILVLDEGHNPRSTKSKLRVLLSGTLFQISFCEYFNTLFLARPRFVHEVLQELDPKYVKSEAENKGPHLVESRARKFFIDKIGVKIDAGNDNKKITSGFIDVYDSVNADSLLRGLQIYTLLMNNTEKQSEILQKLHKKMNRSGRYLLEVEFLITLGSIHPWLISTTKCAKKFFSSSQLKQLEKCKIDLKIGSKVKFVLSLVFRVVKMKEKVLIFCRNLAPMWLLLELFERFFNWKAGTEILTLHGEQELFQRGKVIDKFEDHCGASKVLLASISACAERVSLAVASRVIFLDSEWNPSKTKQTIARAFRPGQDKVVHVYQLLAAGSFEEDKYKKTN* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5455 1095 SMART helicmild6 985 1070 IPR001650 -
Lja1g5455 1095 MobiDBLite consensus disorder prediction 512 539 - -
Lja1g5455 1095 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 41 1094 - -
Lja1g5455 1095 MobiDBLite consensus disorder prediction 342 361 - -
Lja1g5455 1095 Gene3D - 571 836 IPR038718 -
Lja1g5455 1095 CDD SF2_C_SNF 944 1081 - -
Lja1g5455 1095 MobiDBLite consensus disorder prediction 344 361 - -
Lja1g5455 1095 Pfam SNF2-related domain 603 778 IPR000330 GO:0005524|GO:0140658
Lja1g5455 1095 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 958 1095 IPR001650 -
Lja1g5455 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 1092 IPR027417 -
Lja1g5455 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 583 805 IPR027417 -
Lja1g5455 1095 SMART ultradead3 586 811 IPR014001 -
Lja1g5455 1095 Pfam Helicase conserved C-terminal domain 953 1069 IPR001650 -
Lja1g5455 1095 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 615 803 IPR014001 -
Lja1g5455 1095 Gene3D - 874 1095 IPR027417 -
Lja1g5455 1095 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 41 1094 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5455 Lja-Chr1 92821481 92834199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5455 980 1088 RAD5 or RAD16-like Gene Family AT5G05130 36.364 2.31e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g5455 SNF2_N 4.1e-10 CL0023