Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5449 ATGGGAAGGGGAAGGGTGCAGTTGAAGAAGATCGAGAACAAGGTCAACAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGGTTTGCTTAAGAAAGCTCATGAGATCTCAGTGCTTTGTGATGCTGAAGTGGCTCTCATAGTCTTCTCCAGCAAAGGAAAGCTCTATGAATACTCCAGCGATCCCTGTATGGAAAGAATTCTTGAACGATATGAGAGGTATTCATATGCGGAGAGGAAAATTGCCGCGAATGATCCACCACAAAATGAAAATTGGACTCTAGAGCATGCAAAGCTCAAAGCAAGGTTTGAAGTCCTTCAGAGAAATCAAAGGAATTTTATGGGAGAAGAACTTGATGGCCTTAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATTCCGCTCTCAAACACATTAGATCACGAAAGAACCAACTCATGCATGAATCTATTTCAGAGCTTAATAAGAAGGATAAGGCCCTCCAGGAACAGAACAACTTGCTATCGAAGAAGATAAAAGAGAAAGAGAAGGTAGCGGCTCAACAGGCACAACTGGAGCGACATAGTGATGATATAGATCATCTTACATCCTCTGTCCTTGTACCTCTGCAATTGGAAACCTTGAATATTGGAGGCTCCCTACAAGGCACAAGTGATGGAAGAGATAATGAAGCAACCACAACTCAAACCCAAGCTAACTCCCTTCTTCCACCATGGATGCTTCGACCTATGAATGAATAG 741 0.4291 MGRGRVQLKKIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLYEYSSDPCMERILERYERYSYAERKIAANDPPQNENWTLEHAKLKARFEVLQRNQRNFMGEELDGLSIKELQNLEHQLDSALKHIRSRKNQLMHESISELNKKDKALQEQNNLLSKKIKEKEKVAAQQAQLERHSDDIDHLTSSVLVPLQLETLNIGGSLQGTSDGRDNEATTTQTQANSLLPPWMLRPMNE* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5449 246 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lja1g5449 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g5449 246 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Lja1g5449 246 Coils Coil 88 108 - -
Lja1g5449 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja1g5449 246 Coils Coil 151 171 - -
Lja1g5449 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja1g5449 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja1g5449 246 MobiDBLite consensus disorder prediction 212 246 - -
Lja1g5449 246 MobiDBLite consensus disorder prediction 212 236 - -
Lja1g5449 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja1g5449 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja1g5449 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja1g5449 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 231 - -
Lja1g5449 246 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g5449 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja1g5449 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja1g5449 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Lja1g5449 246 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5449 Lja-Chr1 92545461 92556064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5449 1 192 MADS-box Gene Family AT1G26310 64.141 4.59e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja1g5449 K-box 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5449 K09264 - gmx:100816836 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5449 1 92545461 92556064 Lja4g2064 4 22153053 22168942 ECH
Lja1g2729 1 32540999 32548040 Lja1g5449 1 92545461 92556064 ECH
Lja2g1508 2 14624737 14643619 Lja1g5449 1 92545461 92556064 ECH
Lja1g5449 1 92545461 92556064 Lja1g5449 1 92545461 92556064 ECH