Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5441 ATGCAAGAAATACATGATCATTCCATGACGGAGAGGAAGGTACCAAGGCCGCACCACCACCAGATCTTGAAATGCCCTCGCTGTGAGTCACTGAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAAGGCTGCCGTAGGTACTGGACCAAAGGCGGCCTCCTCCGCAACATCACCGTCGGCAGCGGTTCCCGGAAACCAAAGCGCTCCATCAACAAAAACACTGTTCCGTCTGCTCCACCACCACCACCACCACCGGAGCCTCAATCCAGCAGCGGAGGAAGCTCCACACTAACCGAATCGACATCGAAGATGTTCGCGGCGGACCAAAGCGGCGGCGGCGGTGGCGTTTTCAACGAGGCGGAGAGCTTCACGACGAGCAGCATGAGTTCAACCAACGAGGCAATAGATCAGGCGTTTGGGTTTGGGAATAGTAGTAGTAACATACCAGACATACCAGATACGTCGTCGTTTTGGGATGGAGAATTTGGATCGTTGGATTGGCAAGGGAGTGGTGATGATCAAGGTTTGATTGATCTTTCTAATTACAGTGTTGAAGATGATGATCAGCTTTACTGGACCCACACTCACTGGACTTATCAAGACAATCCTGCTCTCTTTCATCTTCCCTGA 657 0.516 MQEIHDHSMTERKVPRPHHHQILKCPRCESLNTKFCYYNNYNLSQPRHFCKGCRRYWTKGGLLRNITVGSGSRKPKRSINKNTVPSAPPPPPPPEPQSSSGGSSTLTESTSKMFAADQSGGGGGVFNEAESFTTSSMSSTNEAIDQAFGFGNSSSNIPDIPDTSSFWDGEFGSLDWQGSGDDQGLIDLSNYSVEDDDQLYWTHTHWTYQDNPALFHLP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5441 218 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 151 IPR045174 GO:0003700|GO:0006355
Lja1g5441 218 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5441 218 ProSiteProfiles Zinc finger Dof-type profile. 23 77 IPR003851 GO:0003677|GO:0006355
Lja1g5441 218 Pfam Dof domain, zinc finger 21 77 IPR003851 GO:0003677|GO:0006355
Lja1g5441 218 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g5441 218 ProSitePatterns Zinc finger Dof-type signature. 25 61 IPR003851 GO:0003677|GO:0006355
Lja1g5441 218 PANTHER DOF ZINC FINGER PROTEIN 4 12 151 - -
Lja1g5441 218 MobiDBLite consensus disorder prediction 65 109 - -
Lja1g5441 218 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5441 Lja-Chr1 92390452 92391290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5441 6 97 C2C2-Dof Transcription Factor Family AT5G60850 64.130 3.45e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g5441 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5441 - - lja:Lj1g3v0579530.1 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5441 1 92390452 92391290 Lja1g5441 1 92390452 92391290 ECH