Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5418 ATGGCTGGTGGTAAAAGGAAAAGGCAACAAAACTTGAGCAGAATCCATTCATTCTCTTGTGGGAAAACTTCATTTAGAGGTGAGCACTCACTTATAGGAGGCCCTGGCTTCTCAAGGATAATCTACTGCAACGAACCAGGACTTAGTGAAGGGAGTGTTTTGAATTATGGTGACAATTATGTCAGAACTACCAAATATACACTAGCTACTTTCCTCCCAAAATCATTATTTGAGCAATTCAGGAGGGTGGCCAATTTTTACTTCCTTATCTGTGCAATCTTGTCTTTCTTCCCGGTCTCTCCTTACTCGGCCGTCAGCAATGTTGTTCCTCTTGTTGCTGTGGTTACTGCTACAATGGGAAAGGAGGCTGTTGAGGATTGGAGGCGGCGAAAGCAGGATATTGAGATGAATAATAGAAAGGTTAAATTGCATCATGGTGAAGGTGTTTTTGACTATTCTAAATGGAGAGATTTGAAAGTTGGAGACATAGTAAGGGTGGAAAAAGATGAATTTTTCCCAACTGATCTCATCTTACTTTCATCGAGCTATGACGACGCAATTTGCTATGTTGAGACTATGAATCTTGATGGCGAAACAAATCTTAAACTGAAACAAGCACTGGAAGAAACCTCCAAGTTACAAGAAGACTCTAGCTTTCAAAATTTCAAAGCTATCATCAAATGTGAAGATCCAAATGCAAATTTGTACTCTTTCATAGGAAATATGGAACATGAAGATCAGATATGTCCTCTTGCACCGCAACAGCTACTGCTTAGGGACTCAAAGTTGAGAAACACAGATTTCATATATGGTGTTGTAATTTTTACAGGACATGATACAAAGGTTATGCAGAATTCTACAGAGCCTCCTTCCAAGAGAAGCACGGTTGAGAAACGAATGGATAAGATCATCTACTTTCTTTTCTTTGTCTTATTTTCCCTTTCTTTTATTGGTTCCATTTTCTTCGGGATCGTGACAAGGGAAGACCTTGAAAATGGAGTAATGAAGAGATGGTACCTCAGACCAGATGATACCACAATTTACTATGATCCAAAGAATGCACCAGTTGCGGCAATGCTGCAATTCTTGACTGCACTTATGTTGTATAGTTACTTGATTCCTATATCTTTGTATGTCTCCATCGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGATGTGCACATGTATTATGAGGAAACTGACCAGCCAGCACAAGCTCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTCGATACTATACTTTCGGATAAAACAGGAACTTTGACTTGCAACTCTATGGAATTTATCAAGTGTTCTATTGGCGGGATCGCCTATGGACAAGGAGTTACTGAAGTTGAGAGAGCTCTAGCAAGGAGAAAAGGATTACCTTCAGGTCAAGAGTCAACCGAAGATGGCAATGTTGCAGAAATTTCTGAAACAAAATCATCTATCAAAGGTTTTAACTTCATGGATGAAAGGATCATGAACGGAAACTGGGTTAAAGAACCTCATGGCGATGTAATACAGAACTTCCTGCGGTTGTTGGCAGTATGCCATACTGCAATCCCTGAAGTTGATGAAGAAACTGGTAAAGTTTCATATGAAGCAGAATCACCTGATGAGGCAGCTTTTGTAATTGCAGCCAGAGAACTTGGATTTGAGTTTTATGAAAGGAAACAGACTACTATTTCACTGCGAGAATTCAATTCCATATCAGGAAAGATAATTGAAAGGTACTACGAACTTTTAAATGTATTAGAGTTTAGTAGTGCGAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGAAGGGAAAACTACTACTACTTAGCAAAGGCGCTGACAGTGTCATGTTTGAACGACTTGCAAAGTATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATCAACGAATATGCTGATGCTGGTTTGAGGACTTTGGTACTTGCATATCGTGAACTCGATGAGGAGGAGTACAATCTATTTAATGAGGAATTCATGGAAGCCAAGAACATTGTGAGTGCTGATAGGGATCAGATTGTAGACGAAATAGCAGAAAAGATTGAGAAGGATTTAATTCTTCTTGGCGCTACAGCAGTTGAGGACAAACTTCAACATGGGGTGCCTGAATGCATTGACAAGCTAGCACAGGCAGGAATTAAGCTATGGGTTTTGACTGGTGATAAAATGGAAACAGCAATCAATATTGGGTTTGCATGTAGTTTACTCAGACAAGGAATGAAGCAAATTATAATTAATTCAGACACTCCAGAAACCAAATCACTGGAGAGAGTGGAGGACCAGTCTGCTGCTGCAGATGCAATTAAGGCAAGTGTTCTTCATCAATTAAGGGAAGGAAAGGCATTACTTGCGGCATCTGATGAAAACTCTGAGGCTTTAGCTCTGATCATTGACGGAAAATCTTTGACTTTTGCTCTAGAAGATGATGTAAAGGACTTGTTTCTTGCGCTTGCCGTTGGTTGTGCATCTGTCATATGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTTACTAGACTAGTAAAGATGAAAACAGGCAGTACTACTCTAGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGATATTGGGATTGGTATCAGCGGTGTCGAAGGAATGCAGGCTGTTATGTCAAGTGATGTTGCAATTGCCCAATTCCGCTTTCTAGAGCGTTTACTTCTTGTGCATGGACATTGGTGCTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAACATTGTTTTTGGCTTCACTCTGTTCTTCTATGAGATCTATGCCTCATTCTCAGGGCAAGCTGCATATAATGATTGGTTCCTATCACTATATAATGTATTCTTCACTTCTCTTCCTGTAATTGCTCTGGGAGTGTTTGACCAGGATATCTCTGCTAGATTATGTCTCAAGTTTCCATTATTATATCAAGAAGGAGTACAAAATGTCCTATTTAGCTGGAAAAGGATCCTTGGTTGGGCATTCAATGGAGTCTTGAGCGCTACCATAATATTCTTCTTCTGCATAGAGGCAATGGAGAATCAAGCGTTCCGCAAAGGCGGTGAAGTTGTTGGGCTGGAAGTTCTTGGCGCCACCATGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATTTACTCATCTGGGGTGGTGTTCTTTTCTGGTATATTTTCTTCCTAGCATATGGAGCCATGGACCCAACCTTATCAACCACTGCCTACAAGGTCTTTGTTGAAGCTTGTGCTCCTGCACCATCTTACTGGCTCATCACTTTGCTTGTGCTTGTTGCTTCCCTCTTTCCGTATTTCGTCTACGCTTCGATCCAAATGCGGTTCTTCCCAATGTTCCATCAAATGATACAGTGGATACGAAATGATGGGCAAGAAAGTGATCCAGAATATGCTAATATTGTACGACAGAGATCAATAAGACACACAACAGTTGGTTTTACAGCTCGTTTCAAAGCATCCAAGAGTTGA 3561 0.4049 MAGGKRKRQQNLSRIHSFSCGKTSFRGEHSLIGGPGFSRIIYCNEPGLSEGSVLNYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLICAILSFFPVSPYSAVSNVVPLVAVVTATMGKEAVEDWRRRKQDIEMNNRKVKLHHGEGVFDYSKWRDLKVGDIVRVEKDEFFPTDLILLSSSYDDAICYVETMNLDGETNLKLKQALEETSKLQEDSSFQNFKAIIKCEDPNANLYSFIGNMEHEDQICPLAPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTEPPSKRSTVEKRMDKIIYFLFFVLFSLSFIGSIFFGIVTREDLENGVMKRWYLRPDDTTIYYDPKNAPVAAMLQFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDVHMYYEETDQPAQARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGIAYGQGVTEVERALARRKGLPSGQESTEDGNVAEISETKSSIKGFNFMDERIMNGNWVKEPHGDVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERKQTTISLREFNSISGKIIERYYELLNVLEFSSARKRMSVIVRDEKGKLLLLSKGADSVMFERLAKYGREFEEKTKQHINEYADAGLRTLVLAYRELDEEEYNLFNEEFMEAKNIVSADRDQIVDEIAEKIEKDLILLGATAVEDKLQHGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIINSDTPETKSLERVEDQSAAADAIKASVLHQLREGKALLAASDENSEALALIIDGKSLTFALEDDVKDLFLALAVGCASVICCRSSPKQKALVTRLVKMKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDVAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFYEIYASFSGQAAYNDWFLSLYNVFFTSLPVIALGVFDQDISARLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCIEAMENQAFRKGGEVVGLEVLGATMYTCVVWVVNCQMALSISYFTYIQHLLIWGGVLFWYIFFLAYGAMDPTLSTTAYKVFVEACAPAPSYWLITLLVLVASLFPYFVYASIQMRFFPMFHQMIQWIRNDGQESDPEYANIVRQRSIRHTTVGFTARFKASKS* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5418 1186 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 485 701 IPR023299 GO:0000166
Lja1g5418 1186 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Lja1g5418 1186 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1141 IPR023298 -
Lja1g5418 1186 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Lja1g5418 1186 Gene3D - 562 698 IPR023299 GO:0000166
Lja1g5418 1186 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Lja1g5418 1186 Gene3D - 699 903 IPR023214 -
Lja1g5418 1186 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 1185 - -
Lja1g5418 1186 SUPERFAMILY Calcium ATPase, transduction domain A 147 285 IPR008250 -
Lja1g5418 1186 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Lja1g5418 1186 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Lja1g5418 1186 PRINTS P-type cation-transporting ATPase superfamily signature 749 759 - -
Lja1g5418 1186 SFLD Haloacid Dehalogenase 408 914 - -
Lja1g5418 1186 Gene3D - 113 287 - -
Lja1g5418 1186 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lja1g5418 1186 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 3 1185 - -
Lja1g5418 1186 Pfam Cation transport ATPase (P-type) 522 625 - -
Lja1g5418 1186 SFLD p-type atpase 408 914 IPR044492 -
Lja1g5418 1186 SUPERFAMILY HAD-like 420 918 IPR036412 -
Lja1g5418 1186 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Lja1g5418 1186 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 827 946 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5418 Lja-Chr1 91425011 91432065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5418 1 1185 Primary Pumps ATPases AT1G68710 70.115 0.0 1804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5418 K01530 K14802 gmx:100797039 2083.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5418 1 91425011 91432065 Lja4g2026 4 21029584 21036080 ECH
Lja1g5418 1 91425011 91432065 Lja1g5418 1 91425011 91432065 ECH