Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5417 ATGGAGCCCATGGATATCGTTGCCAAAGCCAAGGAAGACGCTTCGCTCCCTAAAGCAACAATGACGAAAATTATTAAGGAGATGCTGCCCCCGGATGTTCGTGTCGCCAGAGATGCCCAGGATTTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCGTCTCGTCAGAATCCAATGAAGTCTGTGGCAGAGAGGAGAGAAGGACAATTGCGCCTGAGCACGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGTGATTACATTGAGGAAGTCTATGCAGCATATGAACAGCACAAGTTGGAGACAATGCAGGACACTCTTAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACCGAGGAAGAAGCGTTAGCTGAGCAGCAAAGGATGTTTGCAGAAGCACGTGCTAGGATGAATGGAGGGACCATTACTTCCAAGGAGCCAGATGCTGACCAAAGTTAA 462 0.4762 MEPMDIVAKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGREERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKLETMQDTLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGTITSKEPDADQS* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5417 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Lja1g5417 153 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Lja1g5417 153 Coils Coil 115 135 - -
Lja1g5417 153 PANTHER PROTEIN DR1 HOMOLOG 1 152 IPR044255 -
Lja1g5417 153 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5417 Lja-Chr1 91400168 91404639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5417 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 80.519 5.28e-90 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja1g5417 CBFD_NFYB_HMF 4.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5417 K21751 - gmx:547635 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5417 1 91400168 91404639 Lja1g5417 1 91400168 91404639 ECH