Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5414 ATGGCCGAAGAGGAACACGACCATCACACCTCCCCTGAGTTCGACGACCAAGCTAAGAAGAAGAAGCTTCGCAAGAGGAAAAGATCTCGCAAAACCGAGCATGAAGTAGAACAAGAAGAAGTAGACAATGGGAACGCAGAATCTCCGGAGGAGAGTGAGCAACCACAAACTGAACCAGAAGAACAACAAGAAGTAGAAGTAGAAGAAGACGGTGATGATGAAGAAGAGGAAAAGGTGGAGACCGCTTCTGGGTCTGGAATCATGAGCACCCTGTCTTTTTCGTCTCTGGGTTTGTCTCAACCTACTTCTGAGGCTATTATGGACATGGGTTTTCAAACCATGACTCAGATTCAAGCTAAGGCGATTCCGCCGCTATTGATGGGAAAGGATGTTTTGGGTGCTGCTAGGACAGGTTCTGGAAAAACTCTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACGCCTCGCAATGGAACTGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCTAAGGAACTGCTCAAGCATCATTCGCAAACTCTTGGGTTGGTAATTGGGGGTGCAGGTAGAAGGATAGAAGCTGAGCGCATTGTCAAAGGGGTAAATCTATTGGTAGCAACGCCTGGTCGTCTTCTTGATCACCTTCAAAATACAAAAGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAAGCAGACAGGATATTGGAATCCAACTTTGAGGACGAAATGAAGCAGATCATTAATATACTCCCGAAGAAAAGGCAAACAGCTCTGTTTTCAGCTACACAAACAAAAAAGGTTGAGGATCTTGCCCGCCTGTCGTTTCAGACACCTCCTGTCTATATTGATGTAGATGATGGGAGGAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTACGTTCAAGTTCCCTGTGACAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTACACTGGGCTGGAGTGCTTGAATATTCATGGAAAACAAAAGCAGCATACCCGGACAACTACCTTCTTTAGCTTCTGCAAAGCAGAAAAAGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACTGCTCGTGGGGAAGGTGGAAAGGGAAATGCTTTACTTTTCCTAATTCCTGAAGAAAAGAATTTTCTTCTTTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATTCATTTGACAATAAGAAGCTTGCAAATGTACACTCTCAAATGGAGAAGTTGGTGGCTGTCAATTATCATTTGAATAATATGGCTAAGGATGCTTATAGGTCATATATATTAGCATATAATTCACATTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCTGTTTTTCAAACCCACCGAAGGTAAATCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTTGAAGGAAGAAGACATTGA 1671 0.4225 MAEEEHDHHTSPEFDDQAKKKKLRKRKRSRKTEHEVEQEEVDNGNAESPEESEQPQTEPEEQQEVEVEEDGDDEEEEKVETASGSGIMSTLSFSSLGLSQPTSEAIMDMGFQTMTQIQAKAIPPLLMGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKHHSQTLGLVIGGAGRRIEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILESNFEDEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYIDVDDGRKKVTNEGLQQGYVQVPCDKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKYTGLECLNIHGKQKQHTRTTTFFSFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEKNFLLYLKAAKVPVKEYSFDNKKLANVHSQMEKLVAVNYHLNNMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVATSFCFSNPPKVNLNIDSSASKHRKKIRKVEGRRH* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5414 556 Gene3D - 68 303 IPR027417 -
Lja1g5414 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 298 IPR027417 -
Lja1g5414 556 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 243 251 IPR000629 -
Lja1g5414 556 MobiDBLite consensus disorder prediction 42 79 - -
Lja1g5414 556 Pfam Domain of unknown function (DUF4217) 473 533 IPR025313 -
Lja1g5414 556 Pfam Helicase conserved C-terminal domain 327 431 IPR001650 -
Lja1g5414 556 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5414 556 SMART ultradead3 110 315 IPR014001 -
Lja1g5414 556 SMART DUF4217_3 472 535 IPR025313 -
Lja1g5414 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 297 IPR014001 -
Lja1g5414 556 Pfam DEAD/DEAH box helicase 115 286 IPR011545 GO:0003676|GO:0005524
Lja1g5414 556 CDD DEADc_DDX18 102 299 IPR044773 GO:0003724|GO:0005524
Lja1g5414 556 Gene3D - 309 551 IPR027417 -
Lja1g5414 556 PANTHER RNA HELICASE 61 537 - -
Lja1g5414 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Lja1g5414 556 MobiDBLite consensus disorder prediction 1 86 - -
Lja1g5414 556 SMART helicmild6 351 432 IPR001650 -
Lja1g5414 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 61 537 - -
Lja1g5414 556 CDD SF2_C_DEAD 312 442 - -
Lja1g5414 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 447 IPR027417 -
Lja1g5414 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 311 481 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5414 Lja-Chr1 91314311 91321512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5414 92 450 Eukaryotic Initiation Factors Gene Family AT3G13920 31.978 7.61e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5414 K13179 - gmx:100798290 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5414 1 91314311 91321512 Lja1g5414 1 91314311 91321512 ECH