Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5409 ATGTCAGCCACCGGCAGCGGCGGTGACGACGGCATGTTCTACCCTCCTCCACTTGCCTATCATGAGGACATCGTCAATGATGCTAGCCTCTTCTGGAACACTCTCAAGCGCTTTCACTATGATATGGGTTCCAAGTTCATGATTCCTGTGATTGGAGGGAAGGATCTGGATTTGCACACCCTTTACGTGGAGGTTACTAGGAGAAGTGGTTATGAGAAGGTGGTTGCTGAGAAGAAATGGAGGGAGGTGGGCAGTGTGTTCAATTTCTCCGCTACCACCACAAGTGCTTCTTATGTGCTCAGGAAACACTATCTGAATCTCCTCTACAATTATGAACAAGTTCACTTCTTTAAGGTTCAGGGTCCTATGCATTCTTCTCCTGCAGGTGCATTTTCTGGTGGCAGCTCCTCGTCGAAACCTGATTTTAATCTTGTGGAGTATTCACCTAAGCCTGCAAACAATAGCCCTGAATCCATTGTTGAAGCTAAGGGAGGCCTCTATGGAGAGGGAACAATTGAAGGAAAATTTGATTGTGGCTATTTAGTGTCTGTGAAGCTGGGTTCAGAGGTTCTCAGAGGGGTGCTTTTCCATCCAGAGGAATCGGTTCCTCCTCCATCATCGGTTCCGCAGGATGTCGGAGCCATTGTACCATTCAATCCCAAAGCTCGCCGTTCTGTCCGGAAGAGGAGGAACAGGAGAAGGTGGGACCCTAATTACCCCAAGCCTAATAGGAGTGGCTACAACTTCTTCTTTGCTGCAAAGCATACCAAACTGAAAGAACTCTACCCAAATAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCCTGGAACAGTCTTAGCCCTGATGAAAAAATGGTTTACCAGAACATTGGGTTGATGGACAAGGAAAGGTACAAGAGAGAGTTGACGGAGTACAACGAGAGAATGAAGCTTCGGCAGCCAGAAGAGGTTGAACGTCGTCAATAA 969 0.4727 MSATGSGGDDGMFYPPPLAYHEDIVNDASLFWNTLKRFHYDMGSKFMIPVIGGKDLDLHTLYVEVTRRSGYEKVVAEKKWREVGSVFNFSATTTSASYVLRKHYLNLLYNYEQVHFFKVQGPMHSSPAGAFSGGSSSSKPDFNLVEYSPKPANNSPESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHPEESVPPPSSVPQDVGAIVPFNPKARRSVRKRRNRRRWDPNYPKPNRSGYNFFFAAKHTKLKELYPNREREFTKMIGQSWNSLSPDEKMVYQNIGLMDKERYKRELTEYNERMKLRQPEEVERRQ* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5409 322 CDD ARID_HMGB9-like 27 112 IPR045303 GO:0003677
Lja1g5409 322 Pfam HMG (high mobility group) box 240 307 IPR009071 -
Lja1g5409 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 318 - -
Lja1g5409 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 307 IPR009071 -
Lja1g5409 322 SMART hmgende2 239 308 IPR009071 -
Lja1g5409 322 Gene3D - 19 126 IPR036431 GO:0003677
Lja1g5409 322 SMART ARID_2 22 112 - -
Lja1g5409 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 318 - -
Lja1g5409 322 ProSiteProfiles ARID domain profile. 25 116 IPR001606 GO:0003677
Lja1g5409 322 SUPERFAMILY ARID-like 20 124 IPR036431 GO:0003677
Lja1g5409 322 SUPERFAMILY HMG-box 237 310 IPR036910 -
Lja1g5409 322 Pfam ARID/BRIGHT DNA binding domain 30 112 IPR001606 GO:0003677
Lja1g5409 322 SMART bright_3 26 117 IPR001606 GO:0003677
Lja1g5409 322 CDD HMGB-UBF_HMG-box 240 303 - -
Lja1g5409 322 Gene3D High mobility group box domain 224 322 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5409 Lja-Chr1 91246302 91249445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5409 14 313 ARID Transcription Factor Family AT1G76110 63.312 7.22e-127 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja1g5409 ARID 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5409 - - gmx:100784746 468.003