Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5408 ATGTCGTTGTGGAGTGTGTGTGGTAGATCTGGTGGAGTGTGCGCGGTTGATCGACCATCCTCCATTGTGGCGGCGGCTGGTGGTGATAAGAGTGAGGTTCTTAGTCGACTCAGGGAATTGAACGTTCCAGAGGCTTTGGTTCCTGGTTTTGAGGATGAACTTTGGACGCATTTTCATCTACTTCCCACTAGGTTTGCCTTGGATATGAATGTGGAGAGGGCTCAAGATGTTCTTATGCTTAAAAGTTTACTACACATCGCACGAAACCCGACTACGACAACGGGACCTGCAGTTGAAGTCTGCCTTGTTCAGTTGACTAGCTTACTGTCTGAGACTGGGCTTGACATTCAAGAAACACATGCTTTTTTCACATTGGATGGCTATTCATTGGATGTCTTTGCTGTTAGTGGTTGGCCAGTTGAGGAGACAGAGAAATTAAAACATGTACTAGCAAAGAAAATTCAGAAACTCGAGAAGCAACCACAGTTGAAAGAAAATGGCAGTCTCCCTCTTGCAGAGCAAGGGAAAACTGAGATGGACTTTAGCTCTAGACATGCAAATTTTCCTGATTGTGAAAATGACATCTCAAAAATTGATCCTAGGTGCTTGAGACATGAAAAGAAAATTGCATCAGGACCTTTCAGTGACTTGTATAAAGGCACGTTTGCTAATCAAGATGTAGCTATCAAGGTCCTTAAGGATGAGAATTTGAACGATAGTATACATAGGGAGTTTGCTCAGGAAGTCTACATCCTAAGTAAAGTTCAGCATGAGAATGTTGCAAATTTGTTGGTGCTTGTACAAAGCCTCGAAACCTTTACCTTATCACAGGTAAGATTTGTCTTTCCTAGTTTCATTTTGCTTATTGACTGCGATATCAATCTATTGAGAGAAATTTTGTTAATCACAATGCATCTTTTTTTTTTCCTCAGAATATTTGTCAGGTGGAAGTATATGTATGACTTTCTGCATTTACATAAGACTGTCCTTGCTCTTCCATCTTTGCTGAAAGTAGCAATTGATATTTCCAAAGGAATGGAGTATTTGCATCAGTGTGGTATCATACATCGGGACCTCAAAACGGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGGTTGCTGATTTTGGTGTAGCCAAAGTGTAA 1149 0.4082 MSLWSVCGRSGGVCAVDRPSSIVAAAGGDKSEVLSRLRELNVPEALVPGFEDELWTHFHLLPTRFALDMNVERAQDVLMLKSLLHIARNPTTTTGPAVEVCLVQLTSLLSETGLDIQETHAFFTLDGYSLDVFAVSGWPVEETEKLKHVLAKKIQKLEKQPQLKENGSLPLAEQGKTEMDFSSRHANFPDCENDISKIDPRCLRHEKKIASGPFSDLYKGTFANQDVAIKVLKDENLNDSIHREFAQEVYILSKVQHENVANLLVLVQSLETFTLSQVRFVFPSFILLIDCDINLLREILLITMHLFFFLRIFVRWKYMYDFLHLHKTVLALPSLLKVAIDISKGMEYLHQCGIIHRDLKTANLLIDENGVVKVADFGVAKV* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5408 382 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 318 382 - -
Lja1g5408 382 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 31 105 - -
Lja1g5408 382 ProSiteProfiles Protein kinase domain profile. 203 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5408 382 SUPERFAMILY Protein kinase-like (PK-like) 192 381 IPR011009 -
Lja1g5408 382 Coils Coil 140 160 - -
Lja1g5408 382 Pfam Protein kinase domain 205 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5408 382 Gene3D Phosphorylase Kinase; domain 1 193 276 - -
Lja1g5408 382 SMART tyrkin_6 203 382 IPR020635 GO:0004713|GO:0006468
Lja1g5408 382 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 102 262 - -
Lja1g5408 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Lja1g5408 382 Gene3D Transferase(Phosphotransferase) domain 1 318 382 - -
Lja1g5408 382 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 102 262 - -
Lja1g5408 382 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 31 105 - -
Lja1g5408 382 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 318 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5408 Lja-Chr1 91239858 91244160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5408 102 382 MAP Kinase Kinase Kinase AT4G38470 47.183 3.04e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja1g5408 Pkinase 8.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5408 - - aprc:113864606 319.316