Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5404 ATGGGAACACAACCCCAGCAAACATGTCCAGAAGAAGAGGAGGAGGAGCTGCCAGGTCGTGGAGTTACATTTTCTGGTCAATCAATGTCAACAAGCAGAAGTGTTGGCTCACCATCCAGCCGGAGTGAACAGACAATGGCAACACCAGCTAGTGAGAGCACTTTTCTTAGATTAAACCATCTTGACATACATGGCGGTGACGATGTTGGAACACAGGGTGCAGTTGGTAGCAACAAAAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTACGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGACGAACTGGTTGCTGAATTTGCTGATCCAAGCAATAGCACTTTATCCCCAGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGAGTGTATGATGCTTTGAACGTTCTCATGGCGATGGATATTATTTCAAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAACTAAAGACCGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAAGAGCATATTTGCAAGAACTGGAGGACCAATACATAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGCGGTGGTGTATCCCTGCCTTTTATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAACTTGTGCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGATGACAATTATGTTCTCAAGGCAATGAAATTTCATGAGAGACCTGAGAATGAAAATATAACACACAATCCTACTGATGGAGGTGAAGGTTCTAGCATGTCAGGTTTGTATCATGCACAGGTTGCTACTTTAGTTTCAAACCCGGCAGTTAGGCCGCCTCCCTCATCACCACCACTACCTGGAATATTAAAGGCAAGAGTTAAGAATGAGCATTGA 1035 0.429 MGTQPQQTCPEEEEEELPGRGVTFSGQSMSTSRSVGSPSSRSEQTMATPASESTFLRLNHLDIHGGDDVGTQGAVGSNKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSTLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKRAYLQELEDQYIGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFHERPENENITHNPTDGGEGSSMSGLYHAQVATLVSNPAVRPPPSSPPLPGILKARVKNEH* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5404 344 MobiDBLite consensus disorder prediction 1 94 - -
Lja1g5404 344 SMART DP_2 181 342 IPR014889 -
Lja1g5404 344 Gene3D Transcription factor DP 180 304 IPR038168 -
Lja1g5404 344 SUPERFAMILY "Winged helix" DNA-binding domain 94 175 IPR036390 -
Lja1g5404 344 MobiDBLite consensus disorder prediction 288 307 - -
Lja1g5404 344 PIRSF Txn_factor_DP 5 344 IPR015648 GO:0005667|GO:0051726
Lja1g5404 344 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Lja1g5404 344 PANTHER TRANSCRIPTION FACTOR DP 19 344 - -
Lja1g5404 344 Gene3D - 87 179 IPR036388 -
Lja1g5404 344 MobiDBLite consensus disorder prediction 320 344 - -
Lja1g5404 344 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Lja1g5404 344 Pfam Transcription factor DP 182 297 IPR014889 -
Lja1g5404 344 MobiDBLite consensus disorder prediction 23 55 - -
Lja1g5404 344 CDD DP_DD 179 282 IPR014889 -
Lja1g5404 344 SUPERFAMILY E2F-DP heterodimerization region 180 297 IPR037241 -
Lja1g5404 344 Coils Coil 183 224 - -
Lja1g5404 344 PANTHER TRANSCRIPTION FACTOR DP 19 344 IPR015648 GO:0005667|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5404 Lja-Chr1 90802906 90816584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5404 69 290 E2F-DP Transcription Factor Family AT5G02470 51.570 1.26e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja1g5404 DP 4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5404 K04683 - qsu:112000390 546.969