Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5403 ATGGGAACACAACCCCAACAAACATATCTAGAGGAGGAGGAGGAGCAGCTTCCAGGTCGTGGAGCTACATTTTCTGGTCAATCAATGTCAACAAGCAGAAGTGTTGGCTCGCAATCCAGCCGGAGCGAACAGACAATGGCAACACCAGCTAGTGACAACACTTTTCTTATATTAAACCATCTTGACATACATGGTGGCGATGATGTTGGATCACAGGGTGCAGTTTGTTTGAACAATAGCAAGAAGAAAAAGAGAGTCCAACGTGTTGTTGCAGGTGATAAGAGTGGAAGGGGGCTCCGCCAACTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGACTGAATTTGCTGATCCAAGCCATAACTCTTTATCCCCTGATCAGCAACAATATAATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAGAAGGAAATACAATGGAGAGGTCTTCCTCGCACTAGTTTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTTGGGATAAGGAATAGAATTGAAAAGAAAAGAGCCTATTTGCAAGAAATGAAGGACCAATACATAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCAAGTGGTGGTGTATCTCTGCCTTTTATTTTAGTGCAGACTCGCCCCCATGCAACTGTTGAAATGGAAATATCAGAAGACATGCAACTTGTGCATTTTGATTTCAATAGCTCTCCTTTTGAGCTTCATGACGACAATTATGTTCTCAAGGAAATGAAATTTTGTGAGCGACCTCAGAATGATAACATGACGCCCAATCCTACTGATGGGGGTGAAGGTTCTAGCATGTTAGGTATGTATCATACACAGGTTCCTACTTTAGTTCCAAACCCGACAAATAGGCTTCCCGCATCACCACCACTACTTGGAATATTGAAGGCAAGAGATAAGAATGAGCATTGA 1041 0.4159 MGTQPQQTYLEEEEEQLPGRGATFSGQSMSTSRSVGSQSSRSEQTMATPASDNTFLILNHLDIHGGDDVGSQGAVCLNNSKKKKRVQRVVAGDKSGRGLRQLSMKVCEKVESKGRTTYNEVADELVTEFADPSHNSLSPDQQQYNEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDIEELKAERLGIRNRIEKKRAYLQEMKDQYIGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEMEISEDMQLVHFDFNSSPFELHDDNYVLKEMKFCERPQNDNMTPNPTDGGEGSSMLGMYHTQVPTLVPNPTNRLPASPPLLGILKARDKNEH* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5403 346 Pfam Transcription factor DP 185 309 IPR014889 -
Lja1g5403 346 CDD DP_DD 182 285 IPR014889 -
Lja1g5403 346 SUPERFAMILY "Winged helix" DNA-binding domain 97 178 IPR036390 -
Lja1g5403 346 MobiDBLite consensus disorder prediction 322 346 - -
Lja1g5403 346 PANTHER TRANSCRIPTION FACTOR DP 16 346 - -
Lja1g5403 346 MobiDBLite consensus disorder prediction 1 48 - -
Lja1g5403 346 Coils Coil 207 227 - -
Lja1g5403 346 MobiDBLite consensus disorder prediction 21 48 - -
Lja1g5403 346 Gene3D Transcription factor DP 183 307 IPR038168 -
Lja1g5403 346 Gene3D - 89 182 IPR036388 -
Lja1g5403 346 PIRSF Txn_factor_DP 3 346 IPR015648 GO:0005667|GO:0051726
Lja1g5403 346 PANTHER TRANSCRIPTION FACTOR DP 16 346 IPR015648 GO:0005667|GO:0051726
Lja1g5403 346 SMART E2F_TDP_2 94 177 IPR003316 GO:0005667|GO:0006355
Lja1g5403 346 SMART DP_2 184 344 IPR014889 -
Lja1g5403 346 SUPERFAMILY E2F-DP heterodimerization region 183 300 IPR037241 -
Lja1g5403 346 Pfam E2F/DP family winged-helix DNA-binding domain 97 177 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5403 Lja-Chr1 90788233 90793498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5403 95 293 E2F-DP Transcription Factor Family AT5G02470 53.500 1.02e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja1g5403 DP 8.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5403 K04683 - gmx:100797603 520.005