Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5400 ATGGACGGACGACGCGCCGTCATCGACCCCAAGGTCAGGCGCGTCGGTTTCGCCGCTCCGCCGCCTCAAAACGACTCGGCCTCCGCCTCCCCCGTCACGATACCGCTGCCTCGTCATCTTTCCGAGCGAACAGCCGCCGTCCCCGTCCCCGAGTCAGGGTTCCGCCGCCAGCCATCCGGGGAGTGGGTCCCAGTCGGGAGCTACAATCCCTCCGAATCGCTGCTCGGAACATCGCCGACGGTTACGCCTTCTTCTAATGGTGCCGGGCTTGTAGACGGAGAGTTCTCTGAGGATCTCTCCGGTGACAGTGGATTCCGTCCCAGTGACTCGAGCTTCCCCTGCCGAGGGTTTGATTTGCCGGCTGTGAAGCCAGCGGAGAAAAGCTTCGCTGCGGCGGAGGCGATTGTGAAAACTCATTCTGGTGGAACTACTGAAAAGAGGGAAGGGACTGTCAAAGACGTCAGCCGTGATGTGCCAGCAACGTCAAAGCCCCTGAAAGAGAAAACTACAAAGGCCGAGAGACGAGCCTTGCAGGAGGCACAAAGAGCTGCAAAAGCTGCTGCGAAAGCTGATGGAAGTACATCAGTTACTGAATCCGGCAGAGCAGCAGCCCCAGGTAAAAGTATGAAGCAGACTTCACGAAAGAAAGAAGGTACTCCTGTTACATCATCAGTGGCTACTGATAAGAAATCTGGAGATCGTGCATTAGAAAAAGAGAGGAAGAAAGATGCTCCTCCTCCACGAATGCAATTCGATGACAAGACTAGAGTGGAAAAAGCTAAAAGGCGTGCAGTAGTCAATCAAACTGAAGCTAGAAACAGAGTTGAATTATTCCGGCATTTGCCTCAATACGAACATGGGACTCAGCTTCCTGAACTTGAGTCAAAGCTTTTCCAACTTGATCCGGTGCATCCTTCTGTTTTCAAGGTTGGATTGCGTTACATGACTGGAGATATATCAGGTGATAATGCTCGTTGTATTGAAATGCTTAAAGCATTTCAGGAAGCCATTATAGACTACTCCACTCCACCTGAAAAACTCCTTGTTCGAGATTTAACTGCAAAAATCAGTAGTTATGTTTCATTTTTTACCGAATGCAGGCCACTGTCTGTTAGCATGGGGAATGCAATTAGGTTTGTAAAGAGTCGTATTGCCAAGTTGCCTTTAAATCACACTGAATCTGAGGCAAAAGCAGCTATTTGTTCTGATATTGACCGATTCATTAATGAAAAAATAATTTTTGCTGATAAGGTGATTGTTGGCCATGCTGTTACTAAGGTTAGGGATGGAGATATTCTTCTCACATATGGATTGTCATGTGTTGTTGAAATGATTCTCTTGCATGCCCATGACCTTGGGAAACAGTTCCGAGTTGTGGTGGTAGACTCAAGGCCAAAGCTTGAAGGTCAGGCCTTACTACGTAGGCTTGTGACCAAAGGCCTAAGTTGTACATACACTCATATAAATGCTGTTTCTTATATCATGCACGAGGTCACAAAGGTTTTTCTGGGAGCTTCTGCCATTCTGTGCAATGGAACTGTATATTCAAGGGTTGGGACTGCTTGTGTTGCTATGGTGGCTCATGCATTTAATGTTCCTGTATTAATCTGTTGTGAAACTTATAAGTTTCATGAAAGGGTGCAACTTGATTCAATATGTTCCAATGAACTAGGTAACCCAGATGCTGTTGCCATGGTTCGTGGAAGAAGGGAGGTCAATTATCTGGACAATTGGACTAGTGAAGACAATTTGCTGCTTCTGAATTTAATGTATGATGTTACACCTTCAGATTATATCTCATCAATTGTTACGGATCATGGAATGATACCTCCTACAAGTGTGCCTGTAATTGTGCGCGAGTATGGACGAGACCACATGATACAAAGATAG 1890 0.4672 MDGRRAVIDPKVRRVGFAAPPPQNDSASASPVTIPLPRHLSERTAAVPVPESGFRRQPSGEWVPVGSYNPSESLLGTSPTVTPSSNGAGLVDGEFSEDLSGDSGFRPSDSSFPCRGFDLPAVKPAEKSFAAAEAIVKTHSGGTTEKREGTVKDVSRDVPATSKPLKEKTTKAERRALQEAQRAAKAAAKADGSTSVTESGRAAAPGKSMKQTSRKKEGTPVTSSVATDKKSGDRALEKERKKDAPPPRMQFDDKTRVEKAKRRAVVNQTEARNRVELFRHLPQYEHGTQLPELESKLFQLDPVHPSVFKVGLRYMTGDISGDNARCIEMLKAFQEAIIDYSTPPEKLLVRDLTAKISSYVSFFTECRPLSVSMGNAIRFVKSRIAKLPLNHTESEAKAAICSDIDRFINEKIIFADKVIVGHAVTKVRDGDILLTYGLSCVVEMILLHAHDLGKQFRVVVVDSRPKLEGQALLRRLVTKGLSCTYTHINAVSYIMHEVTKVFLGASAILCNGTVYSRVGTACVAMVAHAFNVPVLICCETYKFHERVQLDSICSNELGNPDAVAMVRGRREVNYLDNWTSEDNLLLLNLMYDVTPSDYISSIVTDHGMIPPTSVPVIVREYGRDHMIQR* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5400 629 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 2 627 - -
Lja1g5400 629 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 2 627 - -
Lja1g5400 629 Gene3D - 415 621 IPR042529 -
Lja1g5400 629 MobiDBLite consensus disorder prediction 138 260 - -
Lja1g5400 629 MobiDBLite consensus disorder prediction 230 260 - -
Lja1g5400 629 Pfam Initiation factor 2 subunit family 319 611 IPR000649 GO:0044237
Lja1g5400 629 MobiDBLite consensus disorder prediction 1 113 - -
Lja1g5400 629 MobiDBLite consensus disorder prediction 64 89 - -
Lja1g5400 629 MobiDBLite consensus disorder prediction 215 229 - -
Lja1g5400 629 MobiDBLite consensus disorder prediction 140 180 - -
Lja1g5400 629 SUPERFAMILY NagB/RpiA/CoA transferase-like 304 621 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5400 Lja-Chr1 90737755 90743880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5400 5 627 Eukaryotic Initiation Factors Gene Family AT5G38640 59.002 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5400 K03680 - gmx:100778711 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5400 1 90737755 90743880 Lja4g2014 4 20918992 20922227 ECH
Lja1g5400 1 90737755 90743880 Lja1g5400 1 90737755 90743880 ECH