Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5397 ATGTTTCCTTCAAATAGTCCCCTAATCTCCTCTTCTGACCAAACATTTCAGTACTCCATTGACTACTTTGAAAGCAACAAAGTAGAAGGAAGCAATGGTAGTACTGAACTTCCTTTTTCCTTTCTTGACTTCCCTTTTCCCTTTGAAGACACTATTGAAAATTTCCTCCTTCAGTTCCAACACCAGCAGCCTCTAGCTGAGCCAGCTGAGCCTCATCAATTACCTGAGGTTTCAACAATGAAAAAGTTGCCTTATTCTAAAGGAAGAAAGCATATCATGGGTAGTAGTACGGAGCAGATCCAAAAAAATAAATCTACATGTATACTACCTCGCAGAAGGAAAGATAGGCACAGCAAGATTCACACGGCAAGAGGGCTTAGGGATCGGAGAATGAGACTTTCCCTTCAAGTCTCAAAGAGGTTTTTTGGTCTGCAAGACATGCTAGGCTTTGATAAACCTTCTGAAACAGTTGAGTGGTTACTGAACCAAGCAAAATCTGAAATCAATCAACTAGCTGGCAAGGGTTCTTCTTTAACTAATTCAGAATGTGAGGGTGCAGTGTCTAGCCTTGAAGAGGTTGTTGCAGTCAATGGAATTCAAGAGCAAGGGAAGGAGCCCCGGCCAGCTGTGAAGAGTGGAAGGACTATTAAGCGTTCGCGAAATAGTGCACTCCATCATCCTCTTGCTAAGGAGTGCAGGGAAAGGGCAAGGGAAAGGGCAAGAGAGAGGACAAAAGAAAAGATGAGGTTGAAGCAAATGGGCTGTTGGAATCCCTTTGGAACTGGAGAATTAGGTTCTGGTAGTTTCCAGATCCCAGGAGTGGATACCTCTTTTGATTTGCAGCTGGCTGAGGTTAAAGAACATAGTTCTCTTTCAAAGGAGAATTGGAGAACTGTAGAGGCCATTTGTTATGAGCAAAGGGTGTCCATAGAAGATTTTCAATTCTCTGAATAG 954 0.4287 MFPSNSPLISSSDQTFQYSIDYFESNKVEGSNGSTELPFSFLDFPFPFEDTIENFLLQFQHQQPLAEPAEPHQLPEVSTMKKLPYSKGRKHIMGSSTEQIQKNKSTCILPRRRKDRHSKIHTARGLRDRRMRLSLQVSKRFFGLQDMLGFDKPSETVEWLLNQAKSEINQLAGKGSSLTNSECEGAVSSLEEVVAVNGIQEQGKEPRPAVKSGRTIKRSRNSALHHPLAKECRERARERARERTKEKMRLKQMGCWNPFGTGELGSGSFQIPGVDTSFDLQLAEVKEHSSLSKENWRTVEAICYEQRVSIEDFQFSE* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5397 317 Pfam TCP family transcription factor 112 249 IPR017887 -
Lja1g5397 317 ProSiteProfiles R domain profile. 230 247 IPR017888 -
Lja1g5397 317 Coils Coil 233 253 - -
Lja1g5397 317 PANTHER TRANSCRIPTION FACTOR TCP18 68 251 - -
Lja1g5397 317 ProSiteProfiles TCP domain profile. 113 171 IPR017887 -
Lja1g5397 317 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 68 251 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5397 Lja-Chr1 90386529 90387482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5397 113 244 TCP Transcription Factor Family AT3G18550 44.156 9.28e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja1g5397 TCP 1.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5397 - - lja:Lj0g3v0128449.1 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5397 1 90386529 90387482 Lja4g2007 4 20765754 20767695 ECH
Lja1g2670 1 31484929 31486838 Lja1g5397 1 90386529 90387482 ECH
Lja2g3166 2 67837402 67840198 Lja1g5397 1 90386529 90387482 ECH
Lja1g5397 1 90386529 90387482 Lja1g5397 1 90386529 90387482 ECH