Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5391 ATGGCTCCTCCATGGGTTCAAGAGCTCCATCTCCGTCACTTCAGCATTCCTGTCACCATTGATAAAATGTTTCCGGTCACGCCGTCGAGGCCAATTCCGGTTAAACCAGGTGACATTTTATACCTTTCCAACCTTGATGACATGATCGGAGCACGTGTATTTACACCCACGGTGTACTTCTATCAATCAGACACTGCGAGTTCTTGGCGAAAACCTGTCACAGAAGTATTAAACGGCGCTCTTGCTGATGTTTTAGTGCCTTATTATCCTCTCTCTGCAAGACTGAGGGAGACCAAGAATGGTAAACTGGAAGTGTTTTTCGGACCGGAACAAGGAGCACTCATGGTTGAAGCACGATCTGACATTTCCTTATCTGAACTTGGAGACCTAACAGCTCCAAACCCAGCTTGGGAGCCTTTGATCTTCAAATTCCCCAATGAGGAACAATATAAAGTCCTAGACATGCCACTAGTTATTGCTCAGGTTACCCAATTCCGATGCGGTGGCTTTAGCCTCGGCTTGAGGCTGTGCCATTGCATATGTGATGGCCTAGGAGCCATGCAGTTTCTAGCTGCATGGGCCGCCACAGCAAAATCAGGGTCGCTGGTTATTGACCCTAAGCCTTGTTGGGACAGGGAAATGTTCAAACCTCGGCACCCGCCCATGGTGAAATTCCCACACATGGAGTTCATGAGAATCGAGGAAGGCTCCAACCTGACAATGACACTATGGCAAACCAAGCCCGTTCAGAAGTGTTATAGGATCCAGCGAGAGTTCCAAAACTACTTGAAAACTCTCGCTCAGCCATCCGATGCTGCAGGCTGCACCACTTTCGATGCCATGGCAGCTCACATTTGGAGATCCTGGGTGAAAGCTCTTGATGTGAGACCACTAGATTACACCCTCAGGTTAACATTTTCAGTCAATGCTAGGCCAAAGCTTAGAAACCCACCTCTGAGAGAAGGGTTCTACGGCAATGTGGTGTGTGTCGCGTGCACAACAAGCTCTGTGTCAGAGCTTGTGCATGGACAACTCCCTGAGACTACTCGTCTGGTTCGCGAAGCCAGACAAAGTGTCTCAGAGGAGTACCTAAGATCCACGGTGGATTATGTTGATGTGGACAGGCCGAAGCAGCTTGAGTTTGGGGGAAAACTAACTATTACACAATGGACCAGGTTCTCAATGTACAAGAGTGCAGATTTTGGGTGGGGTAAGCCACTATATGCTGGTCCTATAGATTTAACACCCACGCCTCAGGTTTGTGTGTTTCTACCTGAAGGGGAGGCTGCTGATTGTAGCGGCTCTATGATTGTGTGCATATGCTTGCCTGAGTCTGCTGCGCAGAAGTTTACACAAGCATTGTTGCTTGATTCAGTGTTGACAGAGTAA 1389 0.4838 MAPPWVQELHLRHFSIPVTIDKMFPVTPSRPIPVKPGDILYLSNLDDMIGARVFTPTVYFYQSDTASSWRKPVTEVLNGALADVLVPYYPLSARLRETKNGKLEVFFGPEQGALMVEARSDISLSELGDLTAPNPAWEPLIFKFPNEEQYKVLDMPLVIAQVTQFRCGGFSLGLRLCHCICDGLGAMQFLAAWAATAKSGSLVIDPKPCWDREMFKPRHPPMVKFPHMEFMRIEEGSNLTMTLWQTKPVQKCYRIQREFQNYLKTLAQPSDAAGCTTFDAMAAHIWRSWVKALDVRPLDYTLRLTFSVNARPKLRNPPLREGFYGNVVCVACTTSSVSELVHGQLPETTRLVREARQSVSEEYLRSTVDYVDVDRPKQLEFGGKLTITQWTRFSMYKSADFGWGKPLYAGPIDLTPTPQVCVFLPEGEAADCSGSMIVCICLPESAAQKFTQALLLDSVLTE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5391 462 PANTHER F21B7.2 12 456 - -
Lja1g5391 462 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 456 - -
Lja1g5391 462 Gene3D - 237 454 IPR023213 -
Lja1g5391 462 Gene3D - 15 232 IPR023213 -
Lja1g5391 462 Pfam Transferase family 17 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5391 Lja-Chr1 90189072 90190460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5391 30 455 Monolignol Biosynthesis Gene Families AT5G48930 29.519 2.93e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5391 K15400 - gmx:100802814 819.305