Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5389 ATGGCCATTTTACCTTTCATGCTTCTTGTTGTAAAGCTCCTCTCCCTTACCTCCCAAATTTGCTCTGTAACCGATAAAATTACCCAGTACGAGTCTCTTCCGGATGGAGCAACACTAGTCTCACAGGGTGGAACATATGAGTTGGGTTTCTTCAGTCCAGGAAGTTCCACAAACCGCTACTTAGGAATTTGGTTCAGAAATGTCTCGGTGAAAACAGTGGTCTGGGTTGCTAACCGTGACAATCCCTTAGCAAATAAAAACTCAGGCAAGTTGAGCATAAGCAAAGAGGGAAACCTCGTCCTGCTCAGCAAGAATGGCACAGCTCACTGGTCAACAAATCAAACAACAAAAGGTAGTTCAGGTGTCATAAGAATAGCACAACTCTTAGCTCCTGGAAACTTTGTTATAAGGGGTGAGAAAGAGGAAGACAGTGATTCTGAGGAATACTTGTGGCAGAGCTTTGACTACCCGACTGATACATTTCTACCTGGAATGAAGCTCGGTTGGAACCTAACTAGTGGCCTTAATAGGCACCTAACAGCTTGGAAGAGTTGGGATGACCCATCTTCTGGTACACTTACTTATGGCTACTTCAAAACAGAAATTCCTGAATTGGAGATACGGAATGATTCCACCATTCTCTTCCGATCTGGCCCTTGGAATGGCATTCAAAACAGCGGCAGACATTCTGTGACGAACCGTCAACTGTTCAACATGGATTTTGTGTCCAAAAAGGATGAGTTTTATTTTCAATACAAGCCGAGGGACCCGTCGTTGATTGCCATGAGTGTCATCAACCAAACCTTGAATGCTTTTCAGCGCTTCATTTTGAATGAAGGAAACAGAACATGGAAGCTTCGCAGTAATACTCCAAGAGATATCTGTGACAACTATGAGCATTGTGGCTCATTTGGGAGCTGCGCCATGGAGAACGAGTCCGCGGTATGCGAGTGTCTGAGTGGATTTGCGCCAAAATCGCCTCAAAATTGGACTGCGAACAACTGGAGTCAAGGATGCGTTCGCTCTGAACCATGGAGCTGCAAGGAGAGGGGTAAAGATGGTTTCACCAAACTTCAAAACGTCAAGGTCCCGGATACTAGTACGTCTTGGTATAATACAAGTATGACACTTGAGGAATGCAGAGTAAAGTGCTGGGAAAATTGTTCATGTACGGCTTATATAAACTCAGACATTTCTGGGGAAGGAAGTGGATGTATCCTCTGGTTTGGGGATCTATTGGACTTGAGACAACTGCCAGATGCAGGGCAAGATCTGTATGTTAGATTGACTGCCTCCGAAACAGTTCTCTATCAAGCACAAGGTAAAGCAAATGATGGCTCTAAGAAAATGGTAGTTGTGGTCGCCATCACAGTTACAGCAATTGTTCTGATCCTATTAACTCTCATGCTTATTTGGTGGAGGAGAAAATTTGAAGTTAGAGGGTTCTTCATGATGAAAGTAGAAAAGAAAAACGATGGCGATCAAGAAGATTCGGAACTGCCTTTATTTGATTTTAATACAGTAGCGGCTACCACTGGTAATTTCTCAGAAGACAAGAAGCTTGGTGAAGGCGGGTTTGGTCCTGTATATAAGGGCACACTACCAGATGGACAGGACGTTGCTGTCAAAAGGCTTTCACATAGTTCGACACAAGGAATGATAGAATTCAAGAACGAGGTTATATTTTGTTCTAAATTTCAACACCGGAACCTTGTCAAGGTCCTTGGCTGTTGCATTGAAGAACAAGAAAAATTACTCATATATGAATATATGCCCAATAAAAGCTTAGATTTCTTTCTTTTCGATTCTTGTCAAAGTAAATTTTTGGACTGGTCTAAGCGGTTTAATATTATAAGCGGAGTTGCGCGAGGGCTTCTTTACCTTCACCAGGACTCCAGATTTAGAGTTATACATAGAGATTTGAAAGCAAGTAATGTTTTATTAGATGATAACATGAATCCAAAAATTTCGGATTTTGGCTTGGCTCGCATGTGTGGAGGTGACCAACTTGAAGGCAGCACAAGCAGAGTAGTTGGAACATATGGTTATATGGCGCCTGAATATGCAATTGATGGGATATTCTCCATCAAATCTGATGTATATAGCTTTGGAATTTTAATATTAGAAATTTTAAGCGGGAAGAAAAATAAAGGACTTTCCTATTCAAACCATAGCTGCAACCTTGTTGGGCATGCATGGAGGTTGTGGAAAGAGTGCACACCAGTGGCATTGATTGATACTTGTTTGGAAGACTCGTATATTCTTTCGGAAACCTTACGATGCATTCATATTGGTCTTTTATGTGTGCAACATCAGCCAGATGATAGACCAACTATGGCATCTGTGCTTATAATGTTAAACAGTGAAAATGCATTACCTCAACCAAAAGAGCCTATCTTCTTCTCGGAGAAAGTTTCAGTTAAGGATAAATCTACTTCTGATTCGATGACATCATCTTCGGTCAATGAAGTAACTGTCTCAATAATGGAACCAAGATAG 2499 0.4166 MAILPFMLLVVKLLSLTSQICSVTDKITQYESLPDGATLVSQGGTYELGFFSPGSSTNRYLGIWFRNVSVKTVVWVANRDNPLANKNSGKLSISKEGNLVLLSKNGTAHWSTNQTTKGSSGVIRIAQLLAPGNFVIRGEKEEDSDSEEYLWQSFDYPTDTFLPGMKLGWNLTSGLNRHLTAWKSWDDPSSGTLTYGYFKTEIPELEIRNDSTILFRSGPWNGIQNSGRHSVTNRQLFNMDFVSKKDEFYFQYKPRDPSLIAMSVINQTLNAFQRFILNEGNRTWKLRSNTPRDICDNYEHCGSFGSCAMENESAVCECLSGFAPKSPQNWTANNWSQGCVRSEPWSCKERGKDGFTKLQNVKVPDTSTSWYNTSMTLEECRVKCWENCSCTAYINSDISGEGSGCILWFGDLLDLRQLPDAGQDLYVRLTASETVLYQAQGKANDGSKKMVVVVAITVTAIVLILLTLMLIWWRRKFEVRGFFMMKVEKKNDGDQEDSELPLFDFNTVAATTGNFSEDKKLGEGGFGPVYKGTLPDGQDVAVKRLSHSSTQGMIEFKNEVIFCSKFQHRNLVKVLGCCIEEQEKLLIYEYMPNKSLDFFLFDSCQSKFLDWSKRFNIISGVARGLLYLHQDSRFRVIHRDLKASNVLLDDNMNPKISDFGLARMCGGDQLEGSTSRVVGTYGYMAPEYAIDGIFSIKSDVYSFGILILEILSGKKNKGLSYSNHSCNLVGHAWRLWKECTPVALIDTCLEDSYILSETLRCIHIGLLCVQHQPDDRPTMASVLIMLNSENALPQPKEPIFFSEKVSVKDKSTSDSMTSSSVNEVTVSIMEPR* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5389 832 CDD B_lectin 31 157 IPR001480 -
Lja1g5389 832 Pfam S-locus glycoprotein domain 215 326 IPR000858 GO:0048544
Lja1g5389 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Lja1g5389 832 Gene3D Phosphorylase Kinase; domain 1 482 590 - -
Lja1g5389 832 Pfam PAN-like domain 347 415 IPR003609 -
Lja1g5389 832 ProSiteProfiles Protein kinase domain profile. 515 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5389 832 Gene3D Hepatocyte Growth Factor 347 427 - -
Lja1g5389 832 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 813 - -
Lja1g5389 832 SUPERFAMILY Protein kinase-like (PK-like) 497 817 IPR011009 -
Lja1g5389 832 ProSiteProfiles Bulb-type lectin domain profile. 24 149 IPR001480 -
Lja1g5389 832 Gene3D Transferase(Phosphotransferase) domain 1 591 798 - -
Lja1g5389 832 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 813 - -
Lja1g5389 832 SMART serkin_6 515 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5389 832 SMART ntp_6 350 429 IPR003609 -
Lja1g5389 832 CDD PAN_AP_plant 346 429 - -
Lja1g5389 832 Gene3D - 18 154 IPR036426 -
Lja1g5389 832 SMART blect_4 30 157 IPR001480 -
Lja1g5389 832 ProSiteProfiles PAN/Apple domain profile. 347 430 IPR003609 -
Lja1g5389 832 CDD STKc_IRAK 521 787 - -
Lja1g5389 832 Pfam Protein tyrosine and serine/threonine kinase 518 783 IPR001245 GO:0004672|GO:0006468
Lja1g5389 832 Pfam Domain of unknown function (DUF3403) 789 832 IPR021820 GO:0004674
Lja1g5389 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Lja1g5389 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 188 IPR036426 -
Lja1g5389 832 Pfam D-mannose binding lectin 72 183 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5389 Lja-Chr1 89966880 89975883 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5389 452 817 Receptor kinase-like Gene Family AT4G23190 51.467 6.53e-127 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g5389 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5389 - - gmx:100792537 1010.36