Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5385 ATGGCATTGATTCTGCTCCGCCCTTGGTGGGTGGCGGCGGCTGTGATATCCTTCATGGCGGTGGTGTGGCAGCTGAGTGAACGAGTCAACGCGGAGCCGACTCAGGATAAACAAGCCCTACTCTCTTTCATATCTCTCACGCGGCACGCGAACCGGGTCCAGTGGAACGCGTCCGACTCGGCCTGCAACTGGTTCGGAGTCCAATGCGACCCTTCACGCTCCTTCATCCACTCTCTTCGCCTCCCCGCCGTCGGCCTCGTCGGCCCCATTCCGCCCAACACAATCGGCCGCCTCACTCAGCTCCGCGTCCTCAGCCTCCGCTCCAACGGCCTCACCGGCGAGATCCCCGCCGATTTCTCCAATCTCTCCCTCCTCACCAACCTCTACCTACAGAACAACCACCTCTCCGGCGAGTTCCCACCCAGCTTGACTCAGATGACTCGCTTGACTCACCTCGTTCTCTCAGCCAACAACTTCACCGGCGAAATCCCGTTCTCCATCAACAACCTCACACACCTCACTGGTCTCTTGTTAGAAAACAACGGTTTCTCCGGTAAACTCCCGAGCATCACGGCCAAGCTAGTCAACTTCAATGTCTCCAACAACCGCCTCAATGGCTCGATCCCCGAGAGCCTCTCCGGTTTCCCCTCATCGTCGTTCGCCGGGAATTTAGATCTCTGCGGAGGGCCGTTAAAGCCGTGCAACCCGTTCTTCCCCCCTCCGTCGGCGCCGTCACCTTCACCGGCCAGTAAGAAGCCGAAGAAGAAGCTCTCCACAGCCGCCATTGTGGGAATTGCGGTAGGTGCTGCTGTGGCTGCATTGCTGTTGCTGGCGCTGCTTCTCTTGCTTTGCTTCTGCCGGCGCAGGCGACCTGCGAAACCACCGCCGGCTGTGGTTGCGTCGCGTGCTGTTCCGGCTGCGGAGGCCGGTACCTCATCTTCCAAAGAGGACATGACCGGGTCGGCGGAGGCGGTGGCGGAGAGGAACAAGCTGGTGTTCTTGGAAGGCAGTGGTGTGTATAGCTTTGACTTGGAGGATTTGTTGAGGGCTTCCGCGGAGGTTTTAGGGAAGGGAAGCATGGGGACTTGTTACAAGGCGGTGTTGGAGGATGGGACTACGGTGGTGGTGAAGAGGATGAAGGATGTTGTAATTACCAAGAAAGAGTTTCAGATGCAAATGGAGGCTCTTGGGAAGATTAACCATGAGAATGTGGTTCCTCTCAGAGCGTTTTACTACTCCAACGATGAGAAATTGCTTGTTTACGATTACATGACTGCTGGGAGCTTGTCTGCTCTGCTTCACGGAAGCAGAGGTTCTGGAGAAACGCCACTGGATTGGGACACACGAATGAGAATAACATTGGGAGCGGCAAGAGGCCTAGCGAGCCTCCACGTGTCAGCAAAATTGGTCCACGGCAACATAAAATCTTCCAACATCCTCCTTCGTTCGAACCATGACGCTTGTGTTTCGGATTTTGGGCTCAACCCAATATTCAAGAACTCTGACCCGCCCAGCCGAATCGCAGGATATCGTGCCCCGGAGATCCTAGAAACCCTAAAATACACCTTCAAATCTGATGTGTACAGCTTCGGCGTGCTGGTGTTGGAGCTGCTAACTGGGAAAGCGCCGAACCAAGCCTCACTAGGGGAGGAAGGGGTCGACCTTCCAAGATGGGTGCAGTCGGTGGTTCGCGAGGAGTGGACCGTGGAGGTATTCGACGCAGAGCTCATGAGATATCAGAACATCGAAGAGGAGATGGTTCAATTGTTGCAGGTCGCAATGGGATGTGTTTCACTCGTGCCCGATCAGAGGCCCACCATGCAGGAAGTGGTGCACATGATTGAGGAGATTAACCGTAGCGAGACCGATGAAAGGTTGCGTGGGTCATCGGATGATCCTTCCAGAGGATCTGATGGTCACACACCACCTCAAGAGTCTCGGTCTACACCAAAATCGGACACGTCATAG 1968 0.5559 MALILLRPWWVAAAVISFMAVVWQLSERVNAEPTQDKQALLSFISLTRHANRVQWNASDSACNWFGVQCDPSRSFIHSLRLPAVGLVGPIPPNTIGRLTQLRVLSLRSNGLTGEIPADFSNLSLLTNLYLQNNHLSGEFPPSLTQMTRLTHLVLSANNFTGEIPFSINNLTHLTGLLLENNGFSGKLPSITAKLVNFNVSNNRLNGSIPESLSGFPSSSFAGNLDLCGGPLKPCNPFFPPPSAPSPSPASKKPKKKLSTAAIVGIAVGAAVAALLLLALLLLLCFCRRRRPAKPPPAVVASRAVPAAEAGTSSSKEDMTGSAEAVAERNKLVFLEGSGVYSFDLEDLLRASAEVLGKGSMGTCYKAVLEDGTTVVVKRMKDVVITKKEFQMQMEALGKINHENVVPLRAFYYSNDEKLLVYDYMTAGSLSALLHGSRGSGETPLDWDTRMRITLGAARGLASLHVSAKLVHGNIKSSNILLRSNHDACVSDFGLNPIFKNSDPPSRIAGYRAPEILETLKYTFKSDVYSFGVLVLELLTGKAPNQASLGEEGVDLPRWVQSVVREEWTVEVFDAELMRYQNIEEEMVQLLQVAMGCVSLVPDQRPTMQEVVHMIEEINRSETDERLRGSSDDPSRGSDGHTPPQESRSTPKSDTS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5385 655 MobiDBLite consensus disorder prediction 635 655 - -
Lja1g5385 655 Gene3D Transferase(Phosphotransferase) domain 1 424 634 - -
Lja1g5385 655 SUPERFAMILY Protein kinase-like (PK-like) 353 615 IPR011009 -
Lja1g5385 655 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Lja1g5385 655 MobiDBLite consensus disorder prediction 617 655 - -
Lja1g5385 655 ProSiteProfiles Protein kinase domain profile. 349 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5385 655 Gene3D Ribonuclease Inhibitor 194 234 IPR032675 -
Lja1g5385 655 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Lja1g5385 655 Pfam Protein kinase domain 352 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5385 655 Pfam Leucine rich repeat 90 135 IPR001611 GO:0005515
Lja1g5385 655 MobiDBLite consensus disorder prediction 617 634 - -
Lja1g5385 655 MobiDBLite consensus disorder prediction 293 319 - -
Lja1g5385 655 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Lja1g5385 655 PANTHER OS05G0480400 PROTEIN 16 631 - -
Lja1g5385 655 CDD STKc_IRAK 355 617 - -
Lja1g5385 655 Gene3D Phosphorylase Kinase; domain 1 317 423 - -
Lja1g5385 655 SUPERFAMILY L domain-like 35 217 - -
Lja1g5385 655 PANTHER OS05G0588300 PROTEIN 16 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5385 Lja-Chr1 89485872 89488811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5385 6 640 Receptor kinase-like Gene Family AT5G58300 52.308 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g5385 Pkinase 4.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5385 - - gmx:100784259 869.766