Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5381 ATGGAGATGGTTTCCTCCTCCGAGGGCAGTACTTCTGGTACAACCAAAACAAGAGACATTGATGGTCTCCTCGCCGGTGTCGGGTACAAAGTCCGGTCATCGGAGCTCCATCAAGTGGCGGAAAACATCGAACGCCTCGAAAACGCCATCGTGAACTCATCCGCCGACATACCTCAGCTCGCTTCTGACACTGTTCACTACGATCCTTCCAACATAGGCACATGGGTGGACACACTCCTCTCCGAGTTCGACCACACCGCCTCCTTACCCTACGATCTCTCCGACGATCTCGCCGCCGCTCCTCCGCCACAACATCACCATCACCACCAACTAATAACCACCGTGGAAGAAGACTCGGGGATAAGGCTCGTCCACATGCTGCTGACGTGTGCGGATTCCCTGCAACGTGGCGACTTCCATCTTGCTGGCTCTCTCATTGAAAACATGCAGGGTTTGTTGGCGCATGTTAGCACCGACCGCGGCATCGGAAAAGTCGCCGGCTACTTCATCGACGCCCTAACCCGCCGCGTGCTCGGTCTGAACAAAAACGGCGTCCTATTGGGGGAGAACGATGTACTCTATTATCACTACTACGAGGCTTGCCCATACCTCAAATTCGCTCACTTCACCGCAAACCAGGCCATCCTCGAAGCCTTCAACGGCCACGATTGCGTCCACGTCATTGACTTCAACCTCATGCAGGGTCTTCAATGGCCGGCGCTCATACAAGCCCTCGCTCTCCGCCCCGGCGGACCTCCTTTCTTGCGACTCACCGGCATTGGCCCTCCGTCGTCGGATGACCGCGACACGCTTCGCGAAATCGGGCTGCGGCTGGCCGATTTGGCGCGGTCGGTCAACGTCCGGTTCGCGTTTCGTGGTGTCGCGGCGTGGCGGCTGGAGGACGTGAAGCCGTGGATGCTCCAAGTGAGCCCGAAGGAGGCCGTGGCGGTGAACTCCATCATGCAGCTCCACCGCCTTCTCGGATCTGAATCCGGTATCGAAGCGGTGTTGGGTTGGATCCAGGATTTGAACCCGAAGATTATGACGGTTGTGGAGCAGGAAGCGAACCACAACGAGGATGGGTTGCTGGAGCGGTTCACGGAGGCACTACATTACTACTCGACCGTTTTTGACTCGTTGGAGGGGTGTCCGGTCGAACCGGATAAAGCGCTGGCCGAGATGTACCTACAAAGGGAGATATGCAATGTGGTGTGCTGCGAGGGAACGGCTCGGGTGGAGCGACACGAACCGCTGGCTAAGTGGAGGGAGCGGCTCGGGAAAGCCGGGTTCAGACCGGTTCATTTGGGTTCCAATGCATTCAAACAGGCAAGCATGTTGTTAACGCTGTTCTCATCAGAGGGTTACTGTGTGGAAGAGAAGGAAGGGTGTTTGACTCTCGGCTGGCATAGCCGCCCCCTTATTGCGGCTTCAGCTTGGCAAGTCGTTGCTGTGCAAGAGACTGAAGCGCTGCGTTTGGAGCACTAG 1485 0.571 MEMVSSSEGSTSGTTKTRDIDGLLAGVGYKVRSSELHQVAENIERLENAIVNSSADIPQLASDTVHYDPSNIGTWVDTLLSEFDHTASLPYDLSDDLAAAPPPQHHHHHQLITTVEEDSGIRLVHMLLTCADSLQRGDFHLAGSLIENMQGLLAHVSTDRGIGKVAGYFIDALTRRVLGLNKNGVLLGENDVLYYHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPFLRLTGIGPPSSDDRDTLREIGLRLADLARSVNVRFAFRGVAAWRLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSESGIEAVLGWIQDLNPKIMTVVEQEANHNEDGLLERFTEALHYYSTVFDSLEGCPVEPDKALAEMYLQREICNVVCCEGTARVERHEPLAKWRERLGKAGFRPVHLGSNAFKQASMLLTLFSSEGYCVEEKEGCLTLGWHSRPLIAASAWQVVAVQETEALRLEH* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5381 494 PANTHER OS05G0574900 PROTEIN 5 484 - -
Lja1g5381 494 SMART DELLA_2 21 93 - -
Lja1g5381 494 ProSiteProfiles GRAS family profile. 114 480 IPR005202 -
Lja1g5381 494 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 484 IPR005202 -
Lja1g5381 494 Coils Coil 36 56 - -
Lja1g5381 494 Pfam Transcriptional regulator DELLA protein N terminal 21 87 IPR021914 -
Lja1g5381 494 Pfam GRAS domain family 123 480 IPR005202 -
Lja1g5381 494 Gene3D - 19 83 IPR038088 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5381 Lja-Chr1 89342618 89344580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5381 20 481 GRAS Transcription Factor Family AT1G14920 48.617 6.78e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g5381 GRAS 1.3e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5381 K14494 - gmx:100805968 752.666