LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5376	ATGGAAAAGAAAAAGGTAGCGGTTCCTCTTGTTTGCCATGGTCACTCTCGCCCAGTGGTCGATCTCTTTTATAGTCCTGTTACTCCCGATGGATTCTTCCTTATCAGCGCAAGCAAGGATTCCAATCCTATGCTCAGGAATGGAGAGACTGGAGACTGGATTGGAACTTTTGAAGGGCACAAAGGCGCAGTCTGGAGTTGCTGCTTGGATGCTAATGCTTTGCGGGCTGCAACTGCTTCTGCTGATTTCTCCTCCAAAGTTTGGGATGCATTAACGGGTGATGAGTTACATTCTTTTGAACATAAGCACATTGTTAGAGCATGTGCTTTTTCTGAGGATACGCACCTTTTGCTCACTGGGGGAGCTGAGAAAATTCTCCGAATTTATGATTTGAATCGTCCTGATGCAGCACCCAGAGAAGTAGATAAATCCCCTGGTTCTGTCAGGACTGTTGCATGGCTTCATAGTGACCAGACAATATTAAGTTCTTGTACTGATATGGGAGGTGTCAGGCTATGGGATGTCAGAACTGGTAAAATAGTGCAGACACTTGATACCCAAGCATCTATGACTAGTGCTGAAGTGAGTCAGGATGGTCGTTATATTACAACTGCTGATGGTTCTACTGTTAAGTTTTGGGATGCAAACCACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCTGCTTCATTGGAGCCCAAGTATGGGAACAAGTTCATTGCTGGAGGAGAAGACATGTGGATCCATGTTTTTGATTTCCATACTGGCAATGAGATTGCATGCAACAAGGGCCATCATGGTCCTGTACACTGTGTCCGTTTCTCCCCTGGAGGAGAATCATATGCATCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGTCCATTGACTCATGATGATGAATCAGAGGTTTTATCCCCCGAAAAAGTGAAGGTAACCGCGGATGAGGTTTCAAGCAAGATTGAGGATTTTCATATTGCAGAGGAGGCTAAGTCCAAAGAAAAGGAAGAGGTTGGGGAGGAATTATAG	1047	0.4508	MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCCLDANALRAATASADFSSKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAAPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRTGKIVQTLDTQASMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCTVESASLEPKYGNKFIAGGEDMWIHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDDESEVLSPEKVKVTADEVSSKIEDFHIAEEAKSKEKEEVGEEL*	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5376	348	PANTHER	OS02G0205400 PROTEIN	1	342	-	-
	Lja1g5376	348	Pfam	WD domain, G-beta repeat	94	130	IPR001680	GO:0005515
	Lja1g5376	348	Pfam	WD domain, G-beta repeat	265	297	IPR001680	GO:0005515
	Lja1g5376	348	Pfam	WD domain, G-beta repeat	54	89	IPR001680	GO:0005515
	Lja1g5376	348	Gene3D	-	9	324	IPR015943	GO:0005515
	Lja1g5376	348	ProSiteProfiles	Trp-Asp (WD) repeats profile.	98	139	IPR001680	GO:0005515
	Lja1g5376	348	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I	1	342	-	-
	Lja1g5376	348	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	266	298	-	-
	Lja1g5376	348	SUPERFAMILY	WD40 repeat-like	5	301	IPR036322	GO:0005515
	Lja1g5376	348	ProSiteProfiles	Trp-Asp (WD) repeats profile.	266	298	IPR001680	GO:0005515
	Lja1g5376	348	CDD	WD40	14	298	-	-
	Lja1g5376	348	SMART	WD40_4	92	130	IPR001680	GO:0005515
	Lja1g5376	348	SMART	WD40_4	259	298	IPR001680	GO:0005515
	Lja1g5376	348	SMART	WD40_4	50	89	IPR001680	GO:0005515
	Lja1g5376	348	SMART	WD40_4	177	214	IPR001680	GO:0005515
	Lja1g5376	348	SMART	WD40_4	134	174	IPR001680	GO:0005515
	Lja1g5376	348	SMART	WD40_4	5	47	IPR001680	GO:0005515
	Lja1g5376	348	SMART	WD40_4	217	256	IPR001680	GO:0005515
	Lja1g5376	348	ProSiteProfiles	Trp-Asp (WD) repeats profile.	57	98	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5376	Lja-Chr1	89151641	89157804	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5376	9	296	Eukaryotic Initiation Factors Gene Family	AT2G46290	28.834	1.56e-40	144

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5376	K13137		-	qsu:111987820	637.491