Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5375 ATGGGGACCTCTGCAAACGCCGTCACCGGCAGCCGAAGCGCCACCGCCACCGTCGACAAAGACGTTGACTATGCACAGTACTTCTGCACCTACTCTTTCCTCTACCACCAGAAGGAGATGCTCTCCGATCGGGTTCGCATGGACGCTTACTTCAATGCTATTTTTGAGAATAGATCTCACTTCCAGGGCAAGACTGTTCTGGATGTGGGAACTGGAAGTGGCATTCTTGCTATATGGTCAGCACAAGCAGGTGCCAGGAAGGTTTATGCGGTGGAAGCTACAAAGATGTCGGAACACGCACGTGCACTAGTGAAAGCGAATAATCTCGAGGACGTAGTTGAAGTCATTGAGGGTTCAATGGAGGATATTTCCTTGCCAGAGAAAGTTGACGTGATCATCTCTGAGTGGATGGGTTACTTTCTTCTGCGCGAGTCTATGTTTGATTCTGTTATATGTGCTCGTGACCGCTGGCTCAAACCAACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCTATCAGGAGTGGGATTGGAGATAAAAAAATGGGTGATTACTATTCAGCTATGGATGATTGGCACAACTTTGTCGATGAAACAAAAACCTGCTATGGTGTTGATATGAACACTTTAACAAAGCCTTTTGCAGAGGAGCAGAAGAAATACTATCTACAGACATCATTGTGGAACAACCTCCATCCACATCAAGTCATAGGAACTGCTGCTGTTGTAAAGGAAATGGACTGTTTAACTGCCACAGTGGCTGACATAGAGAAAGTCAGATCAAAGTTTTCTATGTCAATAACCGTGGAAAACACAAAGTTGTGTGGATTTGGAGGATGGTTTGATGTATACTTTCGGGGAAGAAGTGAGGATCCTGCTGAACATGAGATCGAGTTAAGTACTGCTCCTAGTGTAGACTACGGTACACACTGGGGCCAACAGGTTTTTCTCTTACATCCTCCTACTAATGTGAGTGAAGGTGATGAGTTAAGTGCTTCTTTCCTAATGACTCGTTCAAAGGAAAACCATCGTCTAATGGAGGTTGAGCTTGAGTGTGAGCTTAAACAGCAATCTGGCAAGCTTCTTGCACCTTTCAAAAATCAGTACTACATTGAATGA 1128 0.4512 MGTSANAVTGSRSATATVDKDVDYAQYFCTYSFLYHQKEMLSDRVRMDAYFNAIFENRSHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALVKANNLEDVVEVIEGSMEDISLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWMAPIRSGIGDKKMGDYYSAMDDWHNFVDETKTCYGVDMNTLTKPFAEEQKKYYLQTSLWNNLHPHQVIGTAAVVKEMDCLTATVADIEKVRSKFSMSITVENTKLCGFGGWFDVYFRGRSEDPAEHEIELSTAPSVDYGTHWGQQVFLLHPPTNVSEGDELSASFLMTRSKENHRLMEVELECELKQQSGKLLAPFKNQYYIE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5375 375 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 21 352 IPR025799 GO:0016274|GO:0018216
Lja1g5375 375 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 11 363 IPR025799 GO:0016274|GO:0018216
Lja1g5375 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 31 359 IPR029063 -
Lja1g5375 375 Gene3D Vaccinia Virus protein VP39 21 166 IPR029063 -
Lja1g5375 375 CDD AdoMet_MTases 65 165 - -
Lja1g5375 375 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE PRMT10 11 363 - -
Lja1g5375 375 Gene3D - 168 375 - -
Lja1g5375 375 Pfam Ribosomal protein L11 methyltransferase (PrmA) 62 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5375 Lja-Chr1 89121074 89132691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5375 26 336 C2H2 Transcription Factor Family AT3G12270 32.229 1.01e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5375 K11434 - gmx:100795134 672.544