LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5369	ATGGATGGGAACAAGGACGATGCGCTCAAGTGTTTCAGAATCGCCAAAGAGGCGTTAGAAAGCGGCGATCGGTCACGCGCGTTGAAATTCGTGAGCAAAGCTCGCCGTCTCGACCCCACTCTGCCCGTCGACGATCTATTGACGGCGATAGGGGGCGGCGGCGGCGCAGGCGACAATCCCACCGAAGCAGCTGCCGAGCCGGGGAAGCCCGCTGCTGATAATCCCTCTGTCCGCCGAAGGTCTTCGGCTTCGGCCGCGGCAGCACCGGTTCCTCCGTCATCCTCATCATCATCGTCAGCCTCATACACCACGGAGCAGGTTTCAATTATCAGGGAAATTAAGAGGAAGAAGAACTACTACGAGATTCTAGGTTTAGAGAAGAGTTGCACCGTTGAGGACGTGCGGAAATCCTATAGAAAGCTCTCTCTGAAGGTCCATCCAGACAAGAACAAAGCCCCCGGCGCTGAGGAAGCGTTCAAGGCGGTGTCGAAGGCGTTTCAGTGTCTAGGCAATGAGGAGAGCAAGAGGAAGTATGATCTTTCCGGAGAAGATGAATCTGTCTATGAGAGGCGTGCTGCAGCGAGGCCGGGTCCGGGGGCGGCGAGGGCTTATAATGGCTACTATGAGGCTGATTTTGATGCTGATGAGATATTCAGGAATTTCTTCTTTGGAGGGATGCGTCCTACAGCAACAGCTAGCTTTGGAGGGTTTAGTTTTGGACCTGGGATGGGTCACAGGCATGCTGATAATGATAATCATGGCTCTGGTGGTGGCTTCAATGCACGCGCTTTGATTCAATTGTTTCCGGTCTTGCTTATTTTACTCATTAACTTTTTGCCCTCATCGGAACCAATCTATACACTTTCTCAAAGCTACCCTTATGAGCATAGAGTTACTACACCTAGGGGTGTTAACTACTATGTTAAGTCCACAAAGTTTGCTCAGGATTATCCTGAGGGTACCCGTGAGCGTGAGACGGTTGAGGACAAGGTTGAGAGGGAGTACTTCGGCATCCTTCGCCAGAACTGTCAGTTTGAGTTGCAGCGTCGCCAGTGGGGCTATATCAAAGAAACTCCACACTGTGATATTCTCCGGAAATATGAGTTGGTAAACTAA	1116	0.5134	MDGNKDDALKCFRIAKEALESGDRSRALKFVSKARRLDPTLPVDDLLTAIGGGGGAGDNPTEAAAEPGKPAADNPSVRRRSSASAAAAPVPPSSSSSSSASYTTEQVSIIREIKRKKNYYEILGLEKSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLGNEESKRKYDLSGEDESVYERRAAARPGPGAARAYNGYYEADFDADEIFRNFFFGGMRPTATASFGGFSFGPGMGHRHADNDNHGSGGGFNARALIQLFPVLLILLINFLPSSEPIYTLSQSYPYEHRVTTPRGVNYYVKSTKFAQDYPEGTRERETVEDKVEREYFGILRQNCQFELQRRQWGYIKETPHCDILRKYELVN*	372

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5369	371	MobiDBLite	consensus disorder prediction	44	102	-	-
	Lja1g5369	371	PANTHER	-	1	368	-	-
	Lja1g5369	371	ProSiteProfiles	dnaJ domain profile.	118	182	IPR001623	-
	Lja1g5369	371	Pfam	Domain of unknown function (DUF1977)	280	351	IPR015399	-
	Lja1g5369	371	PRINTS	DnaJ domain signature	138	153	IPR001623	-
	Lja1g5369	371	PRINTS	DnaJ domain signature	154	174	IPR001623	-
	Lja1g5369	371	PRINTS	DnaJ domain signature	120	138	IPR001623	-
	Lja1g5369	371	SMART	dnaj_3	117	174	IPR001623	-
	Lja1g5369	371	ProSitePatterns	Nt-dnaJ domain signature.	159	178	IPR018253	-
	Lja1g5369	371	SUPERFAMILY	Chaperone J-domain	85	178	IPR036869	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5369	Lja-Chr1	88917616	88919909	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5369	113	179	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	40.845	1.06e-09	57.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5369	K09518		-	gmx:100788812	470.314

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