Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5360 ATGAGCAGCGATAACAAGAACAGCAACGAGAGAGACCTTGAGCTTTCGTTTGACGACGAAGGTGATAATATTGAAGCGGTGAAGTTCGAGAGTGATAGTAGCAGCGATGAAGGTGGCAGTGATAATGAAGGGAATCGCACAACACAGCCTGAGTCTTTCACTTCTCATCAATGGCCTCAAAGTTACAAAGAGACTACAGATTCTTACACCATTGCTACAGCTCCAAATTTTGAGTCAATTCTACGAGGGCCGAGTTATCTTTATTCGAGTTTTGAAAATCGTTCAAAGAGCAACTTAGAGATAGATGGAAAGACTCCTTTTCTATCAGGTCATGAAGGCATTACTCAATCAACATGGTGGCATAAAGATTCAGTGCAAAGACAAATTAGTGGTGAATTTCCCATTTCGTACGGGTGCAGCTTCACTCAAACAGTTATCAATGGGATTAATGTGATGGCTGGAGTTGGCCTTCTATCTACACCTTATACAGTGAAACAAGCAGGGTGGGTGAGCATGGGCCTGATGCTGCTCTTTGCAATTATTTGTTGTTACACAGCCAACCTTATGAGACTCTGCTTTGAAAGCAAAGAAGGAATCACTAGCTACCCAGATATAGGGGAGGCTGCATTTGGAAGATATGGTCGTATTTTCGTATCAATCATTTTGTACACCGAATTATATTCATATTGTGTGGAATTCATCACCTTGGAAGGAGATAACCTCTCTAGTATGTTTCCTGGAACATCCTTAGATCTGGGTAGTTTACAGCTAGACTCCATGCACTTGTTTGGAGTTTTGACTGCACTTATTATTCTCCCTACTGTATGGTTGAAGGATCTTCGAATAATCTCTTATCTATCAGCTGGGGGGATTGCTGCGACATTAATCATCATTATCTGTGTATTTTGTGTTGGGACAACTGTTGGATTCCATCCTAGTGGTCAATTGGTAAATTTGAATGGCATTCCATTCGCTCTTGGGGTCTATGGCTTTTGTTTTGCAGGCCATTCAGTTTTTCCGAATATATACCAGTCTATGGCCGACAAAAGACAATTTACTAACGCAGTAATAACATGTTTCATTTTGTGCATTTTGATGTATGGAAGCGTTGCAGTCGTGGGATTTCTCATGTTTGGTGATAGCACTTTGTCTCAGATAACATTGAATATGCCACCCGGTGCATTTGCTTCCACAGTTGCACTGTGGACAACAGTAATTAACCCATTCACTAAATATGCTTTGTTGATGAATCCACTGGCAAGGAGTCTAGAGGAATTGCTGCCAGATAGAATTTCAAGTACTTATTGGTGTTTCATTCTTCTGAGAACAACACTTGTTGCATCTACAGTTTGTGCTGCTTTTCTGATTCCCTTTTTTGGGCTTGTGATGGCTTTAATTGGTTCTCTCTTCAGCATTCTTGTGTCCGTGATAATGCCAAGTTTATGCTTTCTAAAAATTGTGGGGAAAAAGGCTTCGAATACACAGGTTGCACTGAGTATCATAATTGCTGTGCTGGGAATCATTTGTGGACTCCTTGGAACATATTCCTCTATATTGAATATTGCAGATAGTTATTAA 1578 0.4049 MSSDNKNSNERDLELSFDDEGDNIEAVKFESDSSSDEGGSDNEGNRTTQPESFTSHQWPQSYKETTDSYTIATAPNFESILRGPSYLYSSFENRSKSNLEIDGKTPFLSGHEGITQSTWWHKDSVQRQISGEFPISYGCSFTQTVINGINVMAGVGLLSTPYTVKQAGWVSMGLMLLFAIICCYTANLMRLCFESKEGITSYPDIGEAAFGRYGRIFVSIILYTELYSYCVEFITLEGDNLSSMFPGTSLDLGSLQLDSMHLFGVLTALIILPTVWLKDLRIISYLSAGGIAATLIIIICVFCVGTTVGFHPSGQLVNLNGIPFALGVYGFCFAGHSVFPNIYQSMADKRQFTNAVITCFILCILMYGSVAVVGFLMFGDSTLSQITLNMPPGAFASTVALWTTVINPFTKYALLMNPLARSLEELLPDRISSTYWCFILLRTTLVASTVCAAFLIPFFGLVMALIGSLFSILVSVIMPSLCFLKIVGKKASNTQVALSIIIAVLGIICGLLGTYSSILNIADSY* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5360 525 MobiDBLite consensus disorder prediction 38 61 - -
Lja1g5360 525 Pfam Transmembrane amino acid transporter protein 140 518 IPR013057 -
Lja1g5360 525 PANTHER OS05G0424000 PROTEIN-RELATED 30 523 - -
Lja1g5360 525 MobiDBLite consensus disorder prediction 21 35 - -
Lja1g5360 525 PANTHER AMINO ACID TRANSPORTER AVT1A 30 523 - -
Lja1g5360 525 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5360 Lja-Chr1 88709529 88716797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5360 3 460 Amino Acid or Auxin Permease AAAP Family AT2G41190 61.635 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5360 K15015 - gmx:100790344 835.099