Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5359 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTACATTTATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCATTCATGACAGAAGGGAAGGTTTCTCCCGATCCAGTAGAAGGGAAGGTTTCTCCCGAACCAGTAGCAATTGATGCTCCCGGTGGTTTTCTCTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGTGAAAGAACAACAACAATTGCAAATGCAGCAGATGCAACTAATGCGTCAAGCACAATTACAAAGAAGGGATTCTAATCATTCTTCCCTTGGAGGTCCTGTAAATGCTATCACAACAGAAGGAGTGCTCGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTCTAGATGCTAGAATGACACTTTTGAAACCAACAAACCATCCTAGTCAAATGGTTCAAGGAAATTCAGGAAGTGTGACAGCAGCTTTGCAGCAAATCCAGGCTCGATCTCAGCAAACCCCTCAGGAGATCAAAAGTGAAGTCCACATGGGCACCATGCAGAGATCCTTGCCTATGGACCATTCTTCAATTTATGGGCAGGGAGGAGTGCAGTCAAAGCCTGGAATCACAAATGCAGGATTAAATCCCGGAGTTGGTGGTCTCACATTGAAGGGATGGCCTTTAACTGGCATAGATCAAATTCGTCCTGGCTATGGAGCACAAGTTCAAAAGCCTCTCCTTCAGAATGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAACAGATCCTTGCCCAGGCACAAGGAAATATAGACAATTCCTTGATGTATGGAGATATGGATCCACAGAGATTAAGGGGATTGGCTAGGGGAAGTTTGAATGTGAAAGATGGTCAACCAATTACAAATGATGGATCAATAGGATCTCCAATGCAATCCACATCATCTAAGATCAACATGCCGCAAATCCAACAAACCACTTCCCAGCAACAACAAGATCCTTTGCATCCACAGCAACTGGTGCAGAATTACCGAAAAAGGAAAGGACCTACATCTTCAGGAGCTGCCAACAGTACTGGTACAGGAAATACACACGGCCCTTCTAATTCTCAACCATCGACTCCTTCTACTCATACTCCTGGGGATGGAGTAGCTATGGCGGGTAACTTGCAGAATGTCACTGGTGTATCCAAAGGATTGATGATGTATGGTACTGAAGGAACTGGTGGTCTTACATCTTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTATTTGGCACGTTGAAACGTAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTTAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACCAGAAGGTTGTTCTGTGGAACATGGAAACACTGCAAACAGAGAGCACACCAGATGCACACTCTCTTATTATTACTGATGTTCGTTTCAGACCGAATTCAACTCAACTGGCAACGTCTTCATTTGATACTACTTTGCGGCTTTGGGATGCTGCAGATCCTAGCTTTTCTTTGCAGACATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAAATGACTTTTTCTGTTCGTGTGATGATAACAATGAGATTCGCTACTGGAATATTAATCAATGTTCCAGCACTCATGCTTTTAAGGGAGGATCTACCCATGTAAGGTTTCAACCAAGGACTGGACACCTTCTGGCTGCAGCATCTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGAAGATGCACACATTACAGGGACACTCTGCAGAGGTACATTGTATATGTTGGGATACAAATGGAGATTTCTTGGCATCTTTGAGTCAAGATTCTGTCAAAGTGTGGTCACTTGCTACTGGGGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGCGTGTTTCACCCAAGCTACTCTACACTCTTGGTTGTTGGAGGATACCAGTCACTGGAGCTGTGGAATATGGCCGAGAATAAATGTATGACAATACCAGCTCATGAGTGTGTAATATCGTCTCTAGCACAATCACCACTGACAGGGATGGTGGCTTCTACCAGTCACGATAAATCAGTAAAAATTTGGAAATAA 2379 0.4321 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVEGKVSPEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKVKEQQQLQMQQMQLMRQAQLQRRDSNHSSLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMTLLKPTNHPSQMVQGNSGSVTAALQQIQARSQQTPQEIKSEVHMGTMQRSLPMDHSSIYGQGGVQSKPGITNAGLNPGVGGLTLKGWPLTGIDQIRPGYGAQVQKPLLQNANQFQLLPQQQQQILAQAQGNIDNSLMYGDMDPQRLRGLARGSLNVKDGQPITNDGSIGSPMQSTSSKINMPQIQQTTSQQQQDPLHPQQLVQNYRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMAGNLQNVTGVSKGLMMYGTEGTGGLTSSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKAFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDQKVVLWNMETLQTESTPDAHSLIITDVRFRPNSTQLATSSFDTTLRLWDAADPSFSLQTYSGHTSHVVSLDFHPKKNDFFCSCDDNNEIRYWNINQCSSTHAFKGGSTHVRFQPRTGHLLAAASGSVVSLFDVETDRKMHTLQGHSAEVHCICWDTNGDFLASLSQDSVKVWSLATGDCIHELNSSGNMFHSCVFHPSYSTLLVVGGYQSLELWNMAENKCMTIPAHECVISSLAQSPLTGMVASTSHDKSVKIWK* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 585 IPR001680 GO:0005515
Lja1g5359 792 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 678 718 IPR001680 GO:0005515
Lja1g5359 792 SUPERFAMILY WD40 repeat-like 504 792 IPR036322 GO:0005515
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 552 IPR001680 GO:0005515
Lja1g5359 792 Gene3D - 489 643 IPR015943 GO:0005515
Lja1g5359 792 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 792 IPR044716 GO:0003714
Lja1g5359 792 Gene3D - 644 792 IPR015943 GO:0005515
Lja1g5359 792 PRINTS G protein beta WD-40 repeat signature 572 586 IPR020472 -
Lja1g5359 792 PRINTS G protein beta WD-40 repeat signature 530 544 IPR020472 -
Lja1g5359 792 PRINTS G protein beta WD-40 repeat signature 779 792 IPR020472 -
Lja1g5359 792 CDD WD40 507 792 - -
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 760 792 - -
Lja1g5359 792 MobiDBLite consensus disorder prediction 330 414 - -
Lja1g5359 792 Pfam WD domain, G-beta repeat 758 792 IPR001680 GO:0005515
Lja1g5359 792 Pfam WD domain, G-beta repeat 551 585 IPR001680 GO:0005515
Lja1g5359 792 Pfam WD domain, G-beta repeat 674 709 IPR001680 GO:0005515
Lja1g5359 792 Pfam WD domain, G-beta repeat 593 629 IPR001680 GO:0005515
Lja1g5359 792 Pfam WD domain, G-beta repeat 516 543 IPR001680 GO:0005515
Lja1g5359 792 SMART Lish 8 40 IPR006594 GO:0005515
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 596 631 - -
Lja1g5359 792 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 792 - -
Lja1g5359 792 SMART WD40_4 753 792 IPR001680 GO:0005515
Lja1g5359 792 SMART WD40_4 546 585 IPR001680 GO:0005515
Lja1g5359 792 SMART WD40_4 712 751 IPR001680 GO:0005515
Lja1g5359 792 SMART WD40_4 630 668 IPR001680 GO:0005515
Lja1g5359 792 SMART WD40_4 589 629 IPR001680 GO:0005515
Lja1g5359 792 SMART WD40_4 504 543 IPR001680 GO:0005515
Lja1g5359 792 SMART WD40_4 671 709 IPR001680 GO:0005515
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 760 792 IPR001680 GO:0005515
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 553 585 - -
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 638 IPR001680 GO:0005515
Lja1g5359 792 MobiDBLite consensus disorder prediction 326 422 - -
Lja1g5359 792 Pfam LisH 10 36 IPR006594 GO:0005515
Lja1g5359 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 546 - -
Lja1g5359 792 ProSitePatterns Trp-Asp (WD) repeats signature. 530 544 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5359 Lja-Chr1 88679878 88696688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5359 505 710 U-box Gene Family AT2G33340 27.778 6.28e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lja1g5359 WD40 0.017 CL0186