Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5358 ATGGGAGTGTCGAATGCAAACTACAACTCTAAACTGTTGATGAATATAGATATTCCTGTGGTTCAAGACCTTAAGAAAAGGTATCTGATGAAAAATCCTAATGGAAATTCTGCCACAATAACTGCGGCGTCAAAGTACTCATTGAGCAATGATGTGTTGAATGAATCGGTTTACAAGTCAATTGCGGAGTTAAAAAACAACAATGAGGATGGTTATTTTGTGACATACGGAATTGTGAAAGACATTGAATTAAAAACAAATTGGACATATCGTGCATGCCCAATGAGGAATTTCTTAACTGGAGTGAAGGAACAAGATGGGAGATATTTTTGCAGAAAATGCAATAAGGGTTACCACAATGCTACATTTAGGTACAACATTCAAATAGTGGTAGCTGATGAAACTGATTCTACAACCTTCACCGTTTTTGACCGTGAGGCTAGCAATTTTTTGAAAAAAAGCGCAGTGGAACTTCACAATTCATATGCTGAAAGGATGTATCCTCAAGAACTTGATTTGTTCAAAGAAAAGGCTTTTGTATTCAAGGTCCAAGTCAAGACAGAATTCTTCAATTACACGGAGCAGACAAACATACAAGTATATCGGCTGGTTACAGATGATGCACTCATAAAGTCCTTTTTTGATAAATACAAGATAGAAGAGTGCCCTTCCCAAAGTGGTTCTTATGAAATATTGGATGATGATCATGAAACAAATGACACAACCAAGATTAGCAATGCACCCAAACAAAGTGAAGAAGACTCATCATTTGTTAGAACTCCACCCTCAACTAGCAGGACAATTGGTGTAAAAGCAAAGGCCACAATTGATGTTTGTGACGATACTCAGATGTCTGCAAACAAGATTTCAAAAGTGATTAAGCAAGAAAAAGAAGATTAA 900 0.3656 MGVSNANYNSKLLMNIDIPVVQDLKKRYLMKNPNGNSATITAASKYSLSNDVLNESVYKSIAELKNNNEDGYFVTYGIVKDIELKTNWTYRACPMRNFLTGVKEQDGRYFCRKCNKGYHNATFRYNIQIVVADETDSTTFTVFDREASNFLKKSAVELHNSYAERMYPQELDLFKEKAFVFKVQVKTEFFNYTEQTNIQVYRLVTDDALIKSFFDKYKIEECPSQSGSYEILDDDHETNDTTKISNAPKQSEEDSSFVRTPPSTSRTIGVKAKATIDVCDDTQMSANKISKVIKQEKED* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5358 299 Pfam Replication factor-A C terminal domain 72 203 IPR013955 -
Lja1g5358 299 MobiDBLite consensus disorder prediction 243 266 - -
Lja1g5358 299 Gene3D - 42 212 IPR012340 -
Lja1g5358 299 CDD RPA1_DBD_C 61 200 IPR013955 -
Lja1g5358 299 SUPERFAMILY Nucleic acid-binding proteins 59 207 IPR012340 -
Lja1g5358 299 MobiDBLite consensus disorder prediction 228 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5358 Lja-Chr1 88550240 88551933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5358 10 191 Core DNA Replication Machinery Family AT5G45400 25.641 9.50e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5358 - - adu:107490971 169.859