Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5344 ATGCCGCCGGATTCCCCGGAGCTAGACGACGATCCCGAAATTGAGTTCGCCGAGATTGATCCCACCGGTCGTTATGGTCGGTACAAGGAAATTTTAGGAAAAGGGGCTTTCAAGAAAGTATACCGAGCGTTTGATGAGTTGGAAGGAATTGAAGTGGCTTGGAATCAGGTTAAGGTGGCTGATCTATTGCGTAACTCTGAAGATTTAGAGCGCCTTTATTCAGAAGTGCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAATTTTACAGTTCGTGGGTTGACGCTAAGAATGAGAACATTAACTTCATTACTGAAATTTTCACCTCAGGAACATTGCGCCAATACCGGAAGAAACATAAGCATGTTGACTTGAGAGCTTTGAAGAAATGGTCCAGGCAGATTTTGGAGGGCCTTTCGTATCTTCACAGTCATAATCCACCAGTTATTCACCGAGACCTTAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCGGCCATCCTTCAACAGGCCAGTTCAGCTCACAGTGTCATAGGAACCCCAGAGTTCATGGCCCCTGAACTTTATGAAGAGGAATACAACGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGTTGGAGTTGGTCACCTTTGAGTATCCATATATTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACTTCTGGAATAAAGCCAGCATCATTGGCCAAAGTTATAGATATTGAAGTTAAATCATTTATAGAAAAGTGTATTGCTAATGTATCAGAACGCTTACCTGCAAAGGATCTCTTGGTGGATCCCTTCCTTCTGTCAGATTATGACGGTGAAAGTGTAGGTCGATCTTCAAGAGCTGGAACCCTTCATTCAGAAAATAATTGTGATAATCAACCCATTGGAGAAAGTACCGAGGATAATTCTGTTGAGACTAGGGAATTCACTGTGGAAGGACAGAGGAGAGATGTTAATACAATATTTTTAAAACTGCGAATTGCAGATCCCTCAGGTTCTATTCGCAATATACACTTCCCTTTTGATGTTGGAGCAGACACTTCTATCTCTGTTGCTGGTGAAATGGTTGAGCAGTTGGAACTTACTGATCAAGATGTTTCGGCTATTGCTAACATGATCGACTCAGAAATTCAGTATCACATTCCTAGTTGGAATCCTAGTGAAACTCCTGTAAGTAGGCATGAGGCTTCTCCTATGGCAAATGATTCTGTCACTTCTACTGGCAGTCTTGCTTTAGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCAAGGGCATTAGGTGGAAGCTCTCCATTGCGGCACGGACCTTCAAACTTATCTAATGAAGGGGATGTGAGTGCTAGGGAAGGAAGCTTGACTGAAAGTGGTACTGATAAGGAATGTGATGGAGCTGCTGATTCCCCTTTCAGTGAAAGAAGTATTGCATCGGAGTGTTTAGAAAGAACCAGTGAAAAATCTTCTCCGGAAGAATTGCAGCACGTTGCTTCAGACTTATCTAATGAAGGGGATGTGAGTGCTAAGGAAGGAAGCATGGCTGAAAGTAGTGCTGATAAGGAATGTGATGGAGCTGCTGATTCCCCTTTTAGTGAAAGAAGTGTTGCATCGGAGTGTTTAGAAAGAACCAGTGAAAAATCTTCTCCGGAAGAAATATCGGGAAGCTTGGAAGATTCTGAAATAGAATCCATCGATAAAATAGCAAAAGATCTGGAATGTTTGTTGGTTATGCAAAGAGTGGAGCTTGATGAACTAAAGAGGAAACACAAATTAGCTGTGTCAGATCTTTTGAAGGAACTTTCTCCAGAAATGTGCCAAAAGGTCCAAAATATATGTAACCTGGAGATTCCTGACAGTGAAATGTAA 1923 0.4165 MPPDSPELDDDPEIEFAEIDPTGRYGRYKEILGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYSSWVDAKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQASSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVIDIEVKSFIEKCIANVSERLPAKDLLVDPFLLSDYDGESVGRSSRAGTLHSENNCDNQPIGESTEDNSVETREFTVEGQRRDVNTIFLKLRIADPSGSIRNIHFPFDVGADTSISVAGEMVEQLELTDQDVSAIANMIDSEIQYHIPSWNPSETPVSRHEASPMANDSVTSTGSLALEILPSGRKYWSDSPRALGGSSPLRHGPSNLSNEGDVSAREGSLTESGTDKECDGAADSPFSERSIASECLERTSEKSSPEELQHVASDLSNEGDVSAKEGSMAESSADKECDGAADSPFSERSVASECLERTSEKSSPEEISGSLEDSEIESIDKIAKDLECLLVMQRVELDELKRKHKLAVSDLLKELSPEMCQKVQNICNLEIPDSEM* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5344 640 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 636 - -
Lja1g5344 640 CDD STKc_WNK 24 284 - -
Lja1g5344 640 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 341 395 IPR024678 GO:0004674|GO:0005524
Lja1g5344 640 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 9 636 - -
Lja1g5344 640 MobiDBLite consensus disorder prediction 403 423 - -
Lja1g5344 640 MobiDBLite consensus disorder prediction 296 322 - -
Lja1g5344 640 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5344 640 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Lja1g5344 640 MobiDBLite consensus disorder prediction 443 578 - -
Lja1g5344 640 MobiDBLite consensus disorder prediction 297 318 - -
Lja1g5344 640 MobiDBLite consensus disorder prediction 498 512 - -
Lja1g5344 640 SUPERFAMILY Protein kinase-like (PK-like) 28 285 IPR011009 -
Lja1g5344 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lja1g5344 640 Gene3D - 337 429 - -
Lja1g5344 640 MobiDBLite consensus disorder prediction 557 578 - -
Lja1g5344 640 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Lja1g5344 640 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5344 640 MobiDBLite consensus disorder prediction 454 473 - -
Lja1g5344 640 Coils Coil 587 607 - -
Lja1g5344 640 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5344 Lja-Chr1 87095343 87099758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5344 11 414 MAP Kinase Kinase Kinase AT3G51630 55.392 1.76e-160 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja1g5344 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5344 K08867 - gmx:100301899 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5344 1 87095343 87099758 Lja1g5344 1 87095343 87099758 ECH