Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5343 ATGGCCGTTTCAATTTCTTCTTCTTCTTCTTCAGTAACAGCAGCAGTTTCATCAAAACTAGCAACCCAACCTCCACATGCATTTTCCACTTCCATTTCCACCACCAACCACAAGCTAATTACCCGCCTCTCCTCCTCATTCCTGAACTCCTCCACCATCCTCCACGTCACCCCCTCCTCCTCCGCCCGCCGCAACCGCTCTTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGGAAGAAGCCCCACGTGAACATCGGCACAATCGGCCACGTCGACCACGGCAAGACCACCCTGACCGCCGCCCTCACCATGGCGCTCGCCTCCCTCGGCAACAGCGCCCCCAAGAAGTACGACGAGATCGACGCTGCCCCTGAAGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGACGCGCCACTACGCACACGTCGACTGCCCTGGTCACGCCGATTATGTCAAGAACATGATCACTGGTGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATCCTCCTAGCCAAACAGGTTGGTGTCCCTAACGTGGTTGTCTTCCTTAACAAGCAAGACCAGGTTGACGACGAGGAGCTCCTTGAGCTCGTGGAGCTCGAGGTCCGGGAGCTTCTCTCGTCCTACGAGTTTCCCGGTGATGACATCCCCATCACCTCTGGCTCCGCCCTCCTCGCCCTGGAAGCTCTCATGGCCAACCCTGCCATCAAGCGTGGTGAGAACGATTGGGTCGACAAGATTTACCAGCTCATGGACAATGTTGATAGCTACATCCCCATCCCTCAGCGCCAGACCGACCTCCCCTTCCTCCTTGCCATTGAGGATGTGTTCTCCATCACCGGTCGTGGGACCGTTGCCACAGGGAGGATTGAGAGGGGCACCATCAAAGTCGGTGACGTCGTCGACCTTGTCGGATTAAGAGAAACCAGGAACACCACCGTCACCGGAGTTGAGATGTTCCAGAAGATTCTTGACGACGCAATGGCTGGGGACAATGTGGGGTTGTTGCTGAGGGGTATTCAGAAGATTGATATTCAGAGAGGGATGGTTTTGGCCAAGCCTGGAACCATCACACCTCACACTAAGTTTGATGCAATTGTGTATATTCTGAAGAAGGAAGAAGGTGGGAGACACTCACCTTTCTTTGCAGGGTACAGGCCTCAGTTCTATATGAGAACCACTGATGTTACTGGCAAGGTCACTGCCATCATGAACGATAAGGATGAAGAGTCCAAGATGGTGATGCCCGGTGACCGGGTTAAGATGGTGGTGGAACTCATCGTCCCGGTGGCGTGTGAGCAAGGAATGAGGTTTGCTATTAGGGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATCCAATCTATCATTGAGTGA 1446 0.5581 MAVSISSSSSSVTAAVSSKLATQPPHAFSTSISTTNHKLITRLSSSFLNSSTILHVTPSSSARRNRSSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPITSGSALLALEALMANPAIKRGENDWVDKIYQLMDNVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGTIKVGDVVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFDAIVYILKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5343 481 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 123 138 IPR031157 -
Lja1g5343 481 Pfam Elongation factor Tu C-terminal domain 380 479 IPR004160 -
Lja1g5343 481 CDD EFTU_III 382 476 - -
Lja1g5343 481 TIGRFAM small_GTP: small GTP-binding protein domain 85 220 IPR005225 GO:0005525
Lja1g5343 481 Hamap Elongation factor Tu [tuf]. 73 481 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lja1g5343 481 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 380 480 IPR009001 -
Lja1g5343 481 Gene3D Translation factors 420 480 - -
Lja1g5343 481 TIGRFAM EF-Tu: translation elongation factor Tu 74 481 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lja1g5343 481 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 286 IPR000795 GO:0003924|GO:0005525
Lja1g5343 481 Pfam Elongation factor Tu domain 2 307 375 IPR004161 GO:0005525
Lja1g5343 481 PANTHER ELONGATION FACTOR TU-RELATED 34 481 - -
Lja1g5343 481 SUPERFAMILY Translation proteins 287 383 IPR009000 -
Lja1g5343 481 Gene3D Translation factors 288 416 - -
Lja1g5343 481 PANTHER ELONGATION FACTOR TU 34 481 - -
Lja1g5343 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 308 IPR027417 -
Lja1g5343 481 CDD EF_Tu 83 285 IPR041709 -
Lja1g5343 481 Gene3D - 74 285 IPR027417 -
Lja1g5343 481 Pfam Elongation factor Tu GTP binding domain 82 283 IPR000795 GO:0003924|GO:0005525
Lja1g5343 481 CDD EFTU_II 293 379 IPR033720 -
Lja1g5343 481 PRINTS GTP-binding elongation factor signature 203 212 IPR000795 GO:0003924|GO:0005525
Lja1g5343 481 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Lja1g5343 481 PRINTS GTP-binding elongation factor signature 150 160 IPR000795 GO:0003924|GO:0005525
Lja1g5343 481 PRINTS GTP-binding elongation factor signature 130 138 IPR000795 GO:0003924|GO:0005525
Lja1g5343 481 PRINTS GTP-binding elongation factor signature 166 177 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5343 Lja-Chr1 87070688 87073322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5343 80 479 Eukaryotic Initiation Factors Gene Family AT5G60390 30.562 1.60e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5343 K02358 - jre:108984280 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5343 1 87070688 87073322 Lja1g5343 1 87070688 87073322 ECH