Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5341 ATGAGTGCTCCCATGGACACGGAGCAAAACCCCACAACCACAATCGACCAAAACGCCGTCGCTTCCCAACACTCACAACCCGCCGTCGCTTCTCAACACTCACCACTTCCTTCTTTCATGTTTTCCGAGGACAAAGTTCTCGTCCCTGTTGAGGTATGCTTAAAACCTTCCAGCACAGCTCCAATCGACCATGTCCGTTCAGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAGTGGAGGACCCATTCCCGTTCCCACGGATGAACCGTTTCTTACAGATAACGTGCAAAGAATTTGTGTTTGTGATACAGATGAAGGGATGCACGATGATAATGTTCTTTTGTTCTGGCAAGTCAAACCAGTTGTACACGTCTTTCAGCTTAGCGAGGAAGGACCGTGCGAGGATGTAAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAGTGGATGCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGCCTAAAGCAACGATTGTTACGTTATGCAGCAAGTGCTTTGCTCTTTACTAAAAAGGGTGTTGACCCATTTCTAGTTTCATGGAACCGCATAGTTCTTTTACATGGACCCCCAGGAACTGGAAAGACGTCTTTATGCAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTTAAGATACCCACATTGCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTTCAAAAGATTCAAGAAATGGTGGAGGAAGAAGGCAATCTAGTATTTGTTTTGATTGATGAAGTTGAAAGCCTAGCTGCTGCAAGAAAAGCTGCCTTATCTGGTTCTGAACCTTCGGATTCTATTCGGGTTGTCAATGCTTTGCTAACTCAGCTGGACAAGTTAAAATCAGCTCCAAATGTGATAATTCTAACCACATCCAACATAACTGCTGCCATCGGTAAGCCTTAA 1005 0.4388 MSAPMDTEQNPTTTIDQNAVASQHSQPAVASQHSPLPSFMFSEDKVLVPVEVCLKPSSTAPIDHVRSAVEGMLEKRSLSYSGGPIPVPTDEPFLTDNVQRICVCDTDEGMHDDNVLLFWQVKPVVHVFQLSEEGPCEDVSSDGQSSSFNEWMLPAKEFDGMWESLIYESGLKQRLLRYAASALLFTKKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNLRYPHCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSAPNVIILTTSNITAAIGKP* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5341 334 Gene3D - 150 333 IPR027417 -
Lja1g5341 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 326 IPR027417 -
Lja1g5341 334 Pfam ATPase family associated with various cellular activities (AAA) 201 329 IPR003959 GO:0005524|GO:0016887
Lja1g5341 334 CDD AAA 199 326 - -
Lja1g5341 334 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 41 331 IPR044539 -
Lja1g5341 334 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 201 219 IPR001270 GO:0005524
Lja1g5341 334 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 315 329 IPR001270 GO:0005524
Lja1g5341 334 SMART AAA_5 197 332 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5341 Lja-Chr1 87029683 87035669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5341 162 334 Calmodulin-binding Proteins AT3G56690 29.444 1.92e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5341 K22399 - gmx:100795009 541.962