Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5338 ATGGAATCTGGTGATAGTTTCTACTCAGTTGATGAGTTCAAATTGGACAAAAAATGGCTGATTGATCCTCACCATCTCTATGTTGGGCCACGAATTGGAGAAGGAGCTCATGCCAAAGTCTATGAAGGAAAATATAAAAACCAGACTGTTGCTATTAAAATTGTACAGAAAGGAGAAACTGCAGAAGACATCGTCAAGAGAGAAGGGCGCTTTGCAAGGGAGGTGGCTATGTTGTCAAGAGTGCAACATAAGAACTTGGTGAAGTTTATTGGTGCCTGCAAGGAGCCAGTAATGGTGATAGTGACTGAGTTGTTATTAGGAGGAACGTTGCGTAAGTATTTACTAAACATGCGCCCCAAATGCTTGGATACACATGTTGCCATTGGTTTTGCGCTTGATATTGCACGTGCTATGGAATGCCTACATTCTCATGGGATCATACACCGTGATCTTAAGCCGGATAACTTGTTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAGTCCTTAACTGAGATGATGACTGCCGAAACAGGAACTTACCGTTGGATGGCTCCGGAGTTGTATAGTACTGTCACACTGAGGCAGGGGGAGAAGAAGCATTACAACCATAAAGTCGATGCTTATAGTTTCGCAATCGTGTTTTGGGAGCTCTTACACAACAAAGTTCCTTTTGAAGGCATGTCAAACCTACAGGCAGCATATGCTGCAGCCTTTAAGAGTGTAAGGCCAAGTGCAGAGAATCTTCCTGAGGAATTGGCTGTAATTCTTACTTCATGCTGGCAAGAGGACCCAAATGCCAGACCCAACTTCACTCGGATAATCCAAATGCTCCTAAACTATCTTTACACTGTTTCACCTCCTGAACCTGTGATTCCTTCAAGAATATTCACCCCTGAGAACACAGTCTTTCCGCCAGAGTCCCCTGGTACTAGGTCCTTAATGGCCAAACGTGATGACACAGGCGACACACCCAGAGCAAAGGATGAAATCAAGTCTAATGGTTTTCTTTGCTGCTTCAGCCAGTGTTATTAA 1059 0.4363 MESGDSFYSVDEFKLDKKWLIDPHHLYVGPRIGEGAHAKVYEGKYKNQTVAIKIVQKGETAEDIVKREGRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDTHVAIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVFWELLHNKVPFEGMSNLQAAYAAAFKSVRPSAENLPEELAVILTSCWQEDPNARPNFTRIIQMLLNYLYTVSPPEPVIPSRIFTPENTVFPPESPGTRSLMAKRDDTGDTPRAKDEIKSNGFLCCFSQCY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5338 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Lja1g5338 352 PIRSF TyrPK_CSF1-R 1 127 - -
Lja1g5338 352 PIRSF TyrPK_CSF1-R 116 298 - -
Lja1g5338 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Lja1g5338 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5338 352 MobiDBLite consensus disorder prediction 310 335 - -
Lja1g5338 352 Gene3D Transferase(Phosphotransferase) domain 1 107 294 - -
Lja1g5338 352 CDD STKc_MAP3K-like 32 286 - -
Lja1g5338 352 MobiDBLite consensus disorder prediction 321 335 - -
Lja1g5338 352 PANTHER SERINE-THREONINE PROTEIN KINASE 1 327 - -
Lja1g5338 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Lja1g5338 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5338 352 SUPERFAMILY Protein kinase-like (PK-like) 17 315 IPR011009 -
Lja1g5338 352 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 1 327 - -
Lja1g5338 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Lja1g5338 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Lja1g5338 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Lja1g5338 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5338 Lja-Chr1 86365951 86370843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5338 9 352 MAP Kinase Kinase Kinase AT5G50180 79.360 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja1g5338 PK_Tyr_Ser-Thr 1.1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5338 - - gmx:100796593 674.085