Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5334 ATGGAATCCAAACCCGCCCACACTCTCAAACTTCTCTGTAGCTACGGTGGCAAGATCCTACCTCGCCCCACCGACGGCCAACTCCGTTACGTCGGCGGCCACACCAGAGTTCTCGCCGTTGATCGTTCCGTTTCCTTTTCAGAATTGATGGTGAAGCTTGTAGAGTTGTGCGGTTCGTCCGTGACCTTGAGGTGTCAATTGCCCAAGGGAGACTTGGAGACTTTGATTTCCATCACCAACGACGAGGATTTAGCCAACATCTTCCACGAGTACGATCGCGCCTCGTCGGAATTGACTCATCCGTTGAAAATCAGAGCGGTTCTTTCACCGCCGAGATCGATGATGATCAAGAAGCTCTCTCCCGTTCCGTCGTCGTCTACTTCCAGTGCCAGTCACTCCCCGTTCAGATCGCCTCACACCTCCGCCGAATCACTGCCTTACGCGGCGGTGCATCGTATCGTCCGGCAAAATCGCTCGCCGCGGGCGCCGTTAGGGTTTCCGATCAAAGCTTGTTGCTACCCTGGCCGATTCGAAGGAAGCCCAAGATTCTTGTACCGCGGGCCCCACTGCAGCAATTACTGCCATTAA 588 0.5493 MESKPAHTLKLLCSYGGKILPRPTDGQLRYVGGHTRVLAVDRSVSFSELMVKLVELCGSSVTLRCQLPKGDLETLISITNDEDLANIFHEYDRASSELTHPLKIRAVLSPPRSMMIKKLSPVPSSSTSSASHSPFRSPHTSAESLPYAAVHRIVRQNRSPRAPLGFPIKACCYPGRFEGSPRFLYRGPHCSNYCH* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5334 195 CDD PB1_UP2 12 108 - -
Lja1g5334 195 Gene3D - 29 108 - -
Lja1g5334 195 SMART PB1_new 23 111 IPR000270 GO:0005515
Lja1g5334 195 Pfam PB1 domain 24 96 IPR000270 GO:0005515
Lja1g5334 195 MobiDBLite consensus disorder prediction 118 141 - -
Lja1g5334 195 PANTHER OS05G0427100 PROTEIN-RELATED 1 195 - -
Lja1g5334 195 SUPERFAMILY CAD & PB1 domains 25 113 - -
Lja1g5334 195 MobiDBLite consensus disorder prediction 119 140 - -
Lja1g5334 195 PANTHER PB1 DOMAIN PROTEIN 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5334 Lja-Chr1 86017882 86020675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5334 7 96 MAP Kinase Kinase Kinase AT5G57610 48.889 6.04e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5334 - - lja:Lj0g3v0315899.1 362.073