Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5330 ATGGCCACGAAATCAGATCCCAAAGTCTGTGTTCTGCTGAAAGAGGGTGAGGATGAAGACCAGGAAGCAAAGAAGCAGAAGAGAAATGAGGCTGCTGAGGAGGAGCAAAAGAATAAGCAGGGAGGGATGGATATTGATGATGGTGCTTGTTCTGAAGATAGTGATGAAGAGGCACAAAAGGAAAAGATGGAAGTTTTGGCTGATGCTAGTGCTCTGCCACCTCCCAAAAATGGCAAGAGGGAGGGTGACGATGAGAAGCAAGCAAATACAAAGAAGCAGAGGACAGGTGAGGTTATTGAGGAGCAAAAGAATAAGGAGAAAATTAATACACATTATTCTGAAAAAGATAAGAAACCTGAATCCAAAAAACGTGAACCTGCTACCAGTTGCAGATCTCTTGAATCAACAGATGATGGTAGCTCAGAGTCTAGTTTTGACAGAAGCTCCTATGAGGACAATCACGTGAACGATTCAAAGAGTACAGATGATGACGAGGAAGAAATTGAGGAAAAAGCCTCTGAAACTACTCAAGAATGTCCTAAAACCCCAACTACTATGAAAGGAAAAGATGCACCAAAGACAATATACGTTAGAAATTTGTCATACAGTGTGGAACGGGCAGATCTGGAAAGTCTTTTCAAAGATTGTGGAGAAGTTGTTGATGTTCATCTCCATACAGATAGCGAAGGGAGGTTTAAAGCCTTTGGACATGTCGAGTTTGCAACCCCAGCAGCAGCACAAAAAGCTCTTGAGCTGGATAATACAGAACTGTTAAGATGTCCCATTAAAGTTAGTATAGCCATGGGTGAATATGCCCCCAGTAGAAGATTATTCAATAATGGTGACAAGTTTCAGTCTCAAGCTGCACTTTTGAAGGGTTTCGATACATCCCTCGTGGCAGAAAAGCCTAAAACCCCAACTATCCCAGAGAAAAAAAATTCTGCATCAAAGACTATATATGTTAGTAACTTGTCATACGATGTGGAACATGCTGATATGGAATATCTTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTCCATAAAGACCGCAACGGCAGGTTTAGAGGATTTGGTCACGTTGAGTTTGCAACCTCTGAAGCAGCACAAAACGCTCTTGAGTTGGATTATAGAGAAATGTGCAGACGTCGCATTAAAGTCGGTTTAGCTCTGGAAAAGGGTGAATATGCTTGCAATAAGAGTGCATTCCATATGGGTCAAAGGTTTCAGCCTCAAACTGCATTTTTGAAGGATTCCGATAAATCTCATGTGGAAGACAAGCCTGAAAACTCGGGTAACCCAAGAGATGAAAGTTCTGCTTCAAAGACGATATATGTTAGAAACTTGACATACCGTGTGGAACGGACTGATTTGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCTGTGAAGGGAGGTTTAAAGGCTTAGGACATGTTGAGTTTGCAACAGCAGAAGCTGCACATAAAGCTCTTGAGCTGGATAATGCAGAATTGTGTAGACGTACCATCAGAGTTGGTATAGCTCGGGAAAAGGTTGAATATGTTCCTAATAGAAGCAACTTGAGCAGCTCTGTCCAAACGAGTGAAAGATTTCAGCCTCTAACTGCATTTTTTAAGGGTTGTGGTACATCTGTTGTGGAACATCAGCCTGAAACCCTAGCAAAGCCAAGAGAAAAAAATGCTGCTTCAAAGACTATATATGTTACCAACTTGACATATGGTGTGGAACGAGCTGATATGGAAAATCTTTTCAAAGATTGTGGAGATATTGTTGACGTTCGGCTTCATAAAGCTTACCAAGGGGGGTTTAAAGACTTTGCACATGTGGAGTTTTCAACATCAGAAGCAGCACAAAAAGCTCTTGAGTTGGATAATACAGAGTTGTTGAGACGTCCCATCAAAGTTTGTATAGCTGAGGAAAAAGGTGAATATGCCCCCAATCGAAGAAACTTGAGCTGCCCATTCGATAAGGATGCGAGATTTCAGCCTCAATCTGCATTGATAAAGGGTTGTCGTACATCCCTTTTGGAAGACAAGCTTGAAACCCCTGGTAACCCGAAGGTAGAAAATGCTGCATCAAAAACAATATTTATTGGAAACTTGTCATACAGTGTGGAACGGGCTGATGTGGAAAATCTGTTCAAGGGTTGTGGTGAAATAGTTGATGTTCGTCTCTATAGAAATCATGAAGGGAGGTTAAAAGGTTTTGGGCATGTTGATTTTTTGACAGAAGAAGCGGCACTAAAAGCTCTTAAGTTGCATAAGACAGAAATGTTGAAACGCCCTATTGTAGTTGAAATTGCTCAGAAAAAGGATGAATATATCCTCTATAGAAGGAACTTGAGCAACTCAGTTCAGAAGAGTGAAGGAATTCTGTCTTTAACTGTATTTGAGAACTGTTTTGATACATCCCTTGCCGAAGAGAAGCCTGTGAAAGACTCAAAGAATTTCGAGGACCGTGAGGAAGAAACGGAGAGAAATGCCTCCAACACTCCTCTTAAGAGCCCTAAAAGCTCTGCTACTCTTAAACAAAAATTTGCGGCATCAAAGACAATATATGTTAAAAACATTCCATACCATGTGGAACGCGCTGATGTGGAAAATCATTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGACTCCATACAGATCGCGAGGGGAGGTCTATAGGTTCTGGACATATTGAGTTTGCAACAGCAGAAGCATCACAAAAAGCTCTTCAGTTGGATAATACAGAGTTGTTGAAACGACGCATCAAAATAGATATAGCTCACGAAAAGGGTGAATATACCTCTGATAGAAGAAGTTTTAGCAACTTGAGCAGCTTATTCCATAAAGATGAAAGATCACGCTCTCAAACTGTATTTGTGAAGGGTTTTGACACATCCATTGCACAAGAGATGTTGAAAGCTAGCCTTGAAGAACATTTCAGTTCTTGTGGAGAGATTACAAGCATATCAGTTCCAAAATTTTGGGATTCTGGTGTACTTAAGGGGTTTGCTTACTTGGACTTCAAGGATGTTGATGGCTTCAAGAAAGCTCTTCAACTCGATCAAACTGAGCTTGGAGGTTATCCCTTGTTAGTTGAAAAAGCAAAGCCTCGACTTCATAATCAGGGTACATATAGTGCCAGGGGTGATGGTGGCTATCATTTTGGTGGAAGGGATGGAGGTGGCCATGACAGTGGAGTGGGTTGGGGGAATAGTTGTGGCGGTTGGAGGCGTTGA 3246 0.4119 MATKSDPKVCVLLKEGEDEDQEAKKQKRNEAAEEEQKNKQGGMDIDDGACSEDSDEEAQKEKMEVLADASALPPPKNGKREGDDEKQANTKKQRTGEVIEEQKNKEKINTHYSEKDKKPESKKREPATSCRSLESTDDGSSESSFDRSSYEDNHVNDSKSTDDDEEEIEEKASETTQECPKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSEGRFKAFGHVEFATPAAAQKALELDNTELLRCPIKVSIAMGEYAPSRRLFNNGDKFQSQAALLKGFDTSLVAEKPKTPTIPEKKNSASKTIYVSNLSYDVEHADMEYLFKDCGEIVDIRLHKDRNGRFRGFGHVEFATSEAAQNALELDYREMCRRRIKVGLALEKGEYACNKSAFHMGQRFQPQTAFLKDSDKSHVEDKPENSGNPRDESSASKTIYVRNLTYRVERTDLENLFKDCGEIVDVRLCEGRFKGLGHVEFATAEAAHKALELDNAELCRRTIRVGIAREKVEYVPNRSNLSSSVQTSERFQPLTAFFKGCGTSVVEHQPETLAKPREKNAASKTIYVTNLTYGVERADMENLFKDCGDIVDVRLHKAYQGGFKDFAHVEFSTSEAAQKALELDNTELLRRPIKVCIAEEKGEYAPNRRNLSCPFDKDARFQPQSALIKGCRTSLLEDKLETPGNPKVENAASKTIFIGNLSYSVERADVENLFKGCGEIVDVRLYRNHEGRLKGFGHVDFLTEEAALKALKLHKTEMLKRPIVVEIAQKKDEYILYRRNLSNSVQKSEGILSLTVFENCFDTSLAEEKPVKDSKNFEDREEETERNASNTPLKSPKSSATLKQKFAASKTIYVKNIPYHVERADVENHFKDCGEVVDVRLHTDREGRSIGSGHIEFATAEASQKALQLDNTELLKRRIKIDIAHEKGEYTSDRRSFSNLSSLFHKDERSRSQTVFVKGFDTSIAQEMLKASLEEHFSSCGEITSISVPKFWDSGVLKGFAYLDFKDVDGFKKALQLDQTELGGYPLLVEKAKPRLHNQGTYSARGDGGYHFGGRDGGGHDSGVGWGNSCGGWRR* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5330 1081 MobiDBLite consensus disorder prediction 817 846 - -
Lja1g5330 1081 MobiDBLite consensus disorder prediction 1 190 - -
Lja1g5330 1081 SUPERFAMILY RNA-binding domain, RBD 847 946 IPR035979 GO:0003676
Lja1g5330 1081 SUPERFAMILY RNA-binding domain, RBD 307 399 IPR035979 GO:0003676
Lja1g5330 1081 SUPERFAMILY RNA-binding domain, RBD 190 275 IPR035979 GO:0003676
Lja1g5330 1081 MobiDBLite consensus disorder prediction 140 161 - -
Lja1g5330 1081 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 700 776 IPR000504 GO:0003723
Lja1g5330 1081 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 443 516 IPR000504 GO:0003723
Lja1g5330 1081 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 570 646 IPR000504 GO:0003723
Lja1g5330 1081 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 959 1040 IPR000504 GO:0003723
Lja1g5330 1081 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 856 932 IPR000504 GO:0003723
Lja1g5330 1081 MobiDBLite consensus disorder prediction 77 131 - -
Lja1g5330 1081 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 393 IPR000504 GO:0003723
Lja1g5330 1081 SUPERFAMILY RNA-binding domain, RBD 692 788 IPR035979 GO:0003676
Lja1g5330 1081 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 689 935 - -
Lja1g5330 1081 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 117 393 - -
Lja1g5330 1081 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 351 474 - -
Lja1g5330 1081 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 958 1069 - -
Lja1g5330 1081 MobiDBLite consensus disorder prediction 10 42 - -
Lja1g5330 1081 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 633 793 - -
Lja1g5330 1081 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 476 656 - -
Lja1g5330 1081 SUPERFAMILY RNA-binding domain, RBD 563 656 IPR035979 GO:0003676
Lja1g5330 1081 MobiDBLite consensus disorder prediction 419 434 - -
Lja1g5330 1081 Gene3D - 300 411 IPR012677 -
Lja1g5330 1081 Gene3D - 945 1075 IPR012677 -
Lja1g5330 1081 Gene3D - 152 288 IPR012677 -
Lja1g5330 1081 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 269 IPR000504 GO:0003723
Lja1g5330 1081 SUPERFAMILY RNA-binding domain, RBD 434 528 IPR035979 GO:0003676
Lja1g5330 1081 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 117 393 - -
Lja1g5330 1081 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 351 474 - -
Lja1g5330 1081 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 958 1069 - -
Lja1g5330 1081 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 689 935 - -
Lja1g5330 1081 MobiDBLite consensus disorder prediction 817 834 - -
Lja1g5330 1081 Gene3D - 545 656 IPR012677 -
Lja1g5330 1081 Gene3D - 808 944 IPR012677 -
Lja1g5330 1081 Gene3D - 412 522 IPR012677 -
Lja1g5330 1081 Gene3D - 677 780 IPR012677 -
Lja1g5330 1081 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 633 793 - -
Lja1g5330 1081 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 476 656 - -
Lja1g5330 1081 SUPERFAMILY RNA-binding domain, RBD 955 1067 IPR035979 GO:0003676
Lja1g5330 1081 Coils Coil 13 37 - -
Lja1g5330 1081 MobiDBLite consensus disorder prediction 418 440 - -
Lja1g5330 1081 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 445 510 IPR000504 GO:0003723
Lja1g5330 1081 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 572 640 IPR000504 GO:0003723
Lja1g5330 1081 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Lja1g5330 1081 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 858 926 IPR000504 GO:0003723
Lja1g5330 1081 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 702 769 IPR000504 GO:0003723
Lja1g5330 1081 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Lja1g5330 1081 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 962 1033 IPR000504 GO:0003723
Lja1g5330 1081 SMART rrm1_1 571 642 IPR000504 GO:0003723
Lja1g5330 1081 SMART rrm1_1 444 512 IPR000504 GO:0003723
Lja1g5330 1081 SMART rrm1_1 318 389 IPR000504 GO:0003723
Lja1g5330 1081 SMART rrm1_1 701 772 IPR000504 GO:0003723
Lja1g5330 1081 SMART rrm1_1 857 928 IPR000504 GO:0003723
Lja1g5330 1081 SMART rrm1_1 960 1036 IPR000504 GO:0003723
Lja1g5330 1081 SMART rrm1_1 194 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5330 Lja-Chr1 85427532 85489367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5330 419 860 Eukaryotic Initiation Factors Gene Family AT4G34110 21.720 2.20e-14 75.9