Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5329 ATGTTTACTCTTCATCACAAAGGCGGCCACTTTTTAAACTACATGCATGCTCCTGGAAAGAGAGATTTCAGGTGGGAAGACATCATGGATGCCACAAACAAACTAAGTGATGACTTCATGATTGGTTCAAGGAAAATCTACAAAGCTGAATTGGTTACTGAAGATACAGTTGCTGTCAAGAAGATTTCATCAAAAGATGATTTCCTTTTCGATAAAAGCTTCATGAGAGAGGGTAAACCAGCCAAGGAGAGTAAAGTAAAGAAGAGCCTTGATTGTGAGACAAGGTTGAAAATTGTTGTGGGACTGGCTCAAGGAGTGGAGTACCTCCATCATGATTGTGTGCCAAATATCATTCCCAGGGACATCAAATCTAGCAATGTATTGCTAGATTCTAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCTCTGATTGAGAATTATGATGACTCCAATACTGAGTCAAATTCTTGGTTTGCTGGGTCTTACGGCTACATGGCTCCAGAGCATGCATTCTCCCTGCAGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAGTCGTTCTTATGGAACTTTTAGCGGTAGAATGCCAACAAGTTTTGGACCAGACATGA 621 0.4138 MFTLHHKGGHFLNYMHAPGKRDFRWEDIMDATNKLSDDFMIGSRKIYKAELVTEDTVAVKKISSKDDFLFDKSFMREGKPAKESKVKKSLDCETRLKIVVGLAQGVEYLHHDCVPNIIPRDIKSSNVLLDSKMEAHLGDFGLAKALIENYDDSNTESNSWFAGSYGYMAPEHAFSLQATEKSDVYSMGVVLMELLAVECQQVLDQT* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5329 206 PANTHER RECEPTOR-LIKE PROTEIN 55 82 196 - -
Lja1g5329 206 Gene3D Transferase(Phosphotransferase) domain 1 85 203 - -
Lja1g5329 206 Gene3D Phosphorylase Kinase; domain 1 6 84 - -
Lja1g5329 206 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 17 78 - -
Lja1g5329 206 PANTHER RECEPTOR-LIKE PROTEIN 55 17 78 - -
Lja1g5329 206 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 82 196 - -
Lja1g5329 206 SUPERFAMILY Protein kinase-like (PK-like) 17 196 IPR011009 -
Lja1g5329 206 Pfam Protein kinase domain 65 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5329 206 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5329 206 SMART serkin_6 39 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5329 Lja-Chr1 85368821 85369653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5329 25 196 Receptor kinase-like Gene Family AT5G62230 38.679 2.38e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g5329 Pkinase 7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5329 - - lja:Lj0g3v0007739.1 354.755