Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5325 ATGGACCTCGATCCAATGCAAGCAGCCTTGTCAATGATATCTTGTGGGGAAGATGCCTCTTCACAGGGACTAAAGTCCTCAGATATTGATGTGCTTCAAAATGAACAACTTCTTAGTGAGGTGTACTATGAGTGCAAAAAGGATCTCCTGGAAAAGGCGGCGATAGAGTCACCCCTCTCTGAAATTCTGGAAATCAAGATCCCTGCTCTGAACATAGATAAAAATTTAATTCAAGATAACACACCGCTTCTCGACGTGCCATTACCAAGGAGTGTTAGTTCAGGGAGTTTGAGTTCGTTGGACTGGATACATGGTGCTGCAGTGAAGCCTGGTTTCCTTGATTTCCCTGGATTAGATTTCAATTCTGTTTATTGCATGCGGAGAGCATTTAGTGAAGGAGATATAAAGACTCTTGGTGGTAGTAACATGAATATTGGCCAATCTCCCCGTGAGAGGCCTTTTCTTGTCGGGAACTGCATTTGCGAGGAACGTCGAGAAAAGCTCTCAAGATATAGGAATAAGAAGACAAAGAGAAACTTTGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCTCTGGCTGACAGCCAACCGAGAATCCGTGGAAGGTTTGCGAAGACCGAAGAATACGATGTCCCGAGACAATGA 645 0.4434 MDLDPMQAALSMISCGEDASSQGLKSSDIDVLQNEQLLSEVYYECKKDLLEKAAIESPLSEILEIKIPALNIDKNLIQDNTPLLDVPLPRSVSSGSLSSLDWIHGAAVKPGFLDFPGLDFNSVYCMRRAFSEGDIKTLGGSNMNIGQSPRERPFLVGNCICEERREKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEEYDVPRQ* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5325 214 Pfam CCT motif 164 206 IPR010402 GO:0005515
Lja1g5325 214 ProSiteProfiles CCT domain profile. 164 206 IPR010402 GO:0005515
Lja1g5325 214 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 211 - -
Lja1g5325 214 PANTHER CCT MOTIF FAMILY PROTEIN 7 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5325 Lja-Chr1 84427212 84429205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5325 145 210 C2C2-CO-like Transcription Factor Family AT3G21880 43.284 1.83e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g5325 CCT 4.9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5325 - - lja:Lj0g3v0094699.1 412.149