Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5313 ATGCGGAGTCTGAAGCGGCACAGACTCGGCAACTCGGACTGTGCCGCCACGGTGACTTCGAATTCGAAGAAGAAGAAAAAGGAGAACAACTACGGACACTTCCCGTCGAATCTCCTCGCCGCAAGCCTTGATAAGGAATCCATGAGGGAGCGCGGCGGCGAGAAGAGGCCGCCGCTGGTCCGGACCTCGCGGGGCCGCATTCAGGTGCTGCCGTCGCGGTTCAATGACTCCGTTTTGGGCGATTGGAGGAAGGGAGGGAAGAGCGCCAGCGAATTGGAGGAAGAATTTGATTTCAGGGAGCCTTGCGGAAAAGGGAAGAATCTGCCACCACACGGGTATTCGGACTTGACTTTGAGCGACTTGTTTGAACAATCCAAGGGCAATGAGGGAGTTTTGAAGGAGAAGAACAAGGGTGATGATTTTAATGCCGGTGATATAGTGTGGGCCAAGGCAAGAAACAAAGAACCTTTCTGGCCTGCCATTGTCATAGATCCTGTGTGTCAGGTACCTAACCTGGTATTCAAGTCTTCCATACCTGAGGCTACATGTGTAATGTTTCTTCGCCGCTTTGGGAATCAAAATCAAAGGGACTATGCATGGGTCAAGTGTGGCATGATTTTTCCATTTTTGGATCATGTAGAGAGGTTTCAGGGACAGTCTGAATTGAGTTACTGTAATCCCTCTGAATTTCAAACGGCAATAGAGGAGGCATATTTGGCAGATCAGGGCTTTATAGAGAACCTGATTGCAGATGTAAACTCAGCAGCTTGTAAGACTTCCGGTATTCCTATTCTCAAAGGCTTTCAGGAGGTCAATTATTTCAACCAGAACGCAGGATGTCACCTTCTAAAGCAGGATTTATTTGATAAAAAGAAAGACACGCTGCCTTGTGAAGCATGTGGATTGAAACTTCATGTGAATCCTTTCAAAATGTCAAAGAAGCAAAAGGACTTGAGTGGTGGCCTGTTCCTATGTAAAACGTGTGCTACGTTGACAAAATCAAAACACTTTTGCAGCATATGTAAGAAAACTTGGAATCATTCAGATAGCGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCTGAATGCGACAAAATCTCCAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATCTCTGCCATACTTGCAAAGTGAAGTTTGATTTTGAGTTATCTGATTCAGAAAGATCACGACCAAAAGTCAACAATGGTGTAGAAGGCGTATATTTTCCAAGCCTTCACTTAGTTGAGTGCAAGTGTGGTTTTTGTGACACTGGAAAGCAAGAGCTTCCGGAATGGGAACGCCACACAAGTTCCAAATTCCGAAATTGGAGAAAAAGTATTCAGGTTAAAGGGTCCATGCAATCGTTGGAGCATTGGTTCAAGTGTCCAATCATCTACATTCCTGACTTGTTGAAATTTGATACATTTGACTTACTTAAAAGCGGGCTATATATTAGTATTGTTAATGATTTTTCCAACTCATTATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGCAGGAAATGTTCAAGACTTTACATCATGGGTTTGCAAAGCTTGTGAAACACCCGACATCGAGCGGGAGTGTTGTCTTTGTCCAGTAAAAGGTGGTGCTCTAAAGCCATCTGATGTTGACACATTATGGGTTCACGTAACATGTGCTTGGTTTCAACCGGAAGTCTGTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTACGTATTAAATCAAATTCATTTCTGAAGATTTGTGTTATTTGTAAGCAAATTCATGGCTCGTGCACTAAATGTTGCAAGTGCTCCACCTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGCATGGAGTTACATTGTTTGGAGAAAAATGGTAAACAAACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCGAACACTGTTTTGATTTTGCGAACCTCCCTTGGGGTCATTTCAACCGAAAGCCTTATCCAAAGTAAGAAAAAATCTAAGTCAATGTTGATTTCATCCAACGGAATAAAGGTAGAAGATGCTCGTGCAGATAACACTGCACACGAGTCATTCTCCGCTGCTAGGTGTCGTATCTATCAAAGAACAAACCTTACAAAAAAGAGAGCAGCAGATGATGCGGTTTCTCGTCAAGTGAGGGGTCACTACCATCATCCTTTAGATGCAATAAAGAGTTTAAATACATGCAAAGTGTTAGAAGAGCCTCAGGCTTTTTGTTCTTTCAGGGAACGCCTTCGCCACTTACAGAGAACCCAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGTCTATTCGCACGCAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTGAGGCCCAGAATTGCAGATCTAAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATTTGTTCAAGATAAGTGAAGAAGTGGTTGTTGATGCCACTAATAAAGGAAATATCGCTCGGCTAATCAACCATTCTTGTATGCCAAACTGCTATGCAAGGATCATGAGTGTAGGTGATGACGAGAGTCGAATCACCCTCATTGCTAAGACTAACGTATCTTCCGGCGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGTCTGAAGAATTTAAGGTCCCTTGTTTATGTAAAGCTCCAAATTGCCGGAAATTCATGAATTAG 2742 0.4358 MRSLKRHRLGNSDCAATVTSNSKKKKKENNYGHFPSNLLAASLDKESMRERGGEKRPPLVRTSRGRIQVLPSRFNDSVLGDWRKGGKSASELEEEFDFREPCGKGKNLPPHGYSDLTLSDLFEQSKGNEGVLKEKNKGDDFNAGDIVWAKARNKEPFWPAIVIDPVCQVPNLVFKSSIPEATCVMFLRRFGNQNQRDYAWVKCGMIFPFLDHVERFQGQSELSYCNPSEFQTAIEEAYLADQGFIENLIADVNSAACKTSGIPILKGFQEVNYFNQNAGCHLLKQDLFDKKKDTLPCEACGLKLHVNPFKMSKKQKDLSGGLFLCKTCATLTKSKHFCSICKKTWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYLCHTCKVKFDFELSDSERSRPKVNNGVEGVYFPSLHLVECKCGFCDTGKQELPEWERHTSSKFRNWRKSIQVKGSMQSLEHWFKCPIIYIPDLLKFDTFDLLKSGLYISIVNDFSNSLCQIAVHQECYGAGNVQDFTSWVCKACETPDIERECCLCPVKGGALKPSDVDTLWVHVTCAWFQPEVCFASDEKMEPALGILRIKSNSFLKICVICKQIHGSCTKCCKCSTYFHAMCASRAGYRMELHCLEKNGKQTTKMVSYCAYHRAPNPNTVLILRTSLGVISTESLIQSKKKSKSMLISSNGIKVEDARADNTAHESFSAARCRIYQRTNLTKKRAADDAVSRQVRGHYHHPLDAIKSLNTCKVLEEPQAFCSFRERLRHLQRTQNERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRPRIADLREARYRLEGKDCYLFKISEEVVVDATNKGNIARLINHSCMPNCYARIMSVGDDESRITLIAKTNVSSGDELTYDYLFDPDESEEFKVPCLCKAPNCRKFMN* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5313 913 SUPERFAMILY FYVE/PHD zinc finger 334 393 IPR011011 -
Lja1g5313 913 CDD SET_SETD1-like 758 909 - -
Lja1g5313 913 SMART set_7 771 894 IPR001214 GO:0005515
Lja1g5313 913 ProSiteProfiles Extended PHD (ePHD) domain profile. 533 648 IPR034732 -
Lja1g5313 913 Pfam PWWP domain 144 237 IPR000313 -
Lja1g5313 913 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 913 IPR025780 -
Lja1g5313 913 Pfam SET domain 782 887 IPR001214 GO:0005515
Lja1g5313 913 Pfam PHD-zinc-finger like domain 535 647 - -
Lja1g5313 913 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 115 467 - -
Lja1g5313 913 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 502 913 - -
Lja1g5313 913 ProSiteProfiles Zinc finger PHD-type profile. 335 391 IPR019787 -
Lja1g5313 913 MobiDBLite consensus disorder prediction 1 61 - -
Lja1g5313 913 SUPERFAMILY SET domain 755 913 IPR046341 -
Lja1g5313 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 650 IPR013083 -
Lja1g5313 913 ProSiteProfiles SET domain profile. 771 888 IPR001214 GO:0005515
Lja1g5313 913 SMART PHD_3 592 648 IPR001965 -
Lja1g5313 913 SMART PHD_3 337 389 IPR001965 -
Lja1g5313 913 Pfam PHD-finger 337 390 IPR019787 -
Lja1g5313 913 Gene3D SET domain 663 913 IPR046341 -
Lja1g5313 913 SUPERFAMILY Tudor/PWWP/MBT 140 241 - -
Lja1g5313 913 Pfam PHD-finger 502 528 - -
Lja1g5313 913 PANTHER PHD FINGER PROTEINS 502 913 - -
Lja1g5313 913 Gene3D - 132 250 - -
Lja1g5313 913 SMART PostSET_3 897 913 IPR003616 -
Lja1g5313 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 382 IPR013083 -
Lja1g5313 913 ProSiteProfiles Post-SET domain profile. 897 913 IPR003616 -
Lja1g5313 913 CDD ePHD_ATX3_4_5_like 536 647 IPR041955 -
Lja1g5313 913 MobiDBLite consensus disorder prediction 44 61 - -
Lja1g5313 913 ProSiteProfiles PWWP domain profile. 143 212 IPR000313 -
Lja1g5313 913 PANTHER PHD FINGER PROTEINS 115 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5313 Lja-Chr1 82785853 82797943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5313 756 913 C2H2 Transcription Factor Family AT2G23740 34.857 4.25e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g5313 zf-HC5HC2H_2 9.7e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5313 - - gmx:100775276 1259.2