Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5312 ATGGAAACACTATCCTTTCCCATAAACACTCTTATCAATTCCAAAGCTAACTACATTTCTCTGACTGCTTCTACTAATTATGCCTCACTCTCTTCCTTACAACTCTCTCCTTCTTCCACATCCACACCCCTATGTTGGAAGGGTGTTGTTCGAGTTCAAGCTGAGAGTGAGGATTTTGAATTGAAGCAAATGAGGGACATGGCTGCTGCCAGAAAGAGATGGGAAGCTCTGATCAGGGATGGAAAAGTTAAAGTTCTTACCCCAAGGGAAGCTGGGTATGCAGTTCAACTTTCTAACAAGCCCCTTCTTGATGTTCGCCCCTCAAATGAACACTACAAGGCATGGGTGAGAGGTTCAACTTGGATTCCAATATTTGATGTTGATCATACACTAGATGCTGGAACCATTCCCAGAAAAATCACAAATTTTGTTATTGGAGGTTGGTGGAGTGGCATGCCTACACTGTCTTACGAAAGCCAGTTCTTGGCCAAAGTTGAGGAGAAGTTTCCCAAAGATACAGAATTAATCGTTGCATGCCAGAAGGGAGTGAGATCACTAGCTGCCTGTGAACTACTGTATAATGCTGGCTACAAAAATCTGTTCTGGGTTCAAGGAGGCTTAGAGGCTGCTGAAGATGAGGATCTCGTTGTAGAGGGTCCAGTGCCTCTTAAGTTTGCTGGAATTGGTGGCGTTTCTGAGTTTCTTGGTTGGACTGATCAACAAAGAGCTGCTGCAGCCAAGGAAGGTTGGGGATATAGATTAGTGTTTTCCGCACGCCTGCTTGGAATCTTACTTGCCGCCGATGCATTATTTATCGGTGCTCAGCAAATCGGGCACTATCTTCAGGAGATTAGGACCCATTGA 864 0.4479 METLSFPINTLINSKANYISLTASTNYASLSSLQLSPSSTSTPLCWKGVVRVQAESEDFELKQMRDMAAARKRWEALIRDGKVKVLTPREAGYAVQLSNKPLLDVRPSNEHYKAWVRGSTWIPIFDVDHTLDAGTIPRKITNFVIGGWWSGMPTLSYESQFLAKVEEKFPKDTELIVACQKGVRSLAACELLYNAGYKNLFWVQGGLEAAEDEDLVVEGPVPLKFAGIGGVSEFLGWTDQQRAAAAKEGWGYRLVFSARLLGILLAADALFIGAQQIGHYLQEIRTH* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5312 287 Pfam Rhodanese-like domain 92 209 IPR001763 -
Lja1g5312 287 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 81 219 IPR036873 -
Lja1g5312 287 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 21 285 IPR044664 -
Lja1g5312 287 SMART rhod_4 86 216 IPR001763 -
Lja1g5312 287 Gene3D - 83 252 IPR036873 -
Lja1g5312 287 ProSiteProfiles Rhodanese domain profile. 96 219 IPR001763 -
Lja1g5312 287 CDD RHOD 102 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5312 Lja-Chr1 82766141 82774848 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5312 1 287 Sulfurtransferasese or Rhodanese AT4G24750 68.493 1.31e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5312 - - gmx:100791331 474.167