Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5310 ATGGAAACACTATCCTTTCCCATAAACACTCTTATCAATTCCAAAGCTAACTACATTTCTCTGACTGCTTCTACTAATTATGCCTCACTCTCTTCCTTACAACTCTCTCCTTCTTCCACATCCACACCCCTATGTTGGAAGGGTGTTGTTCGAGTTCAAGCTGAGAGTGAGGATTTTGAATTGAAGCAAATGAGGGACATGGCTGCTGCCAGAAAGAGATGGGAAGCTCTGATCAGGGATGGAAAAGTTAAAGTTCTTACCCCAAGGGAAGCTGGGTATGCAGTTCAACTTTCTAACAAGCCCCTTCTTGATGTTCGCCCCTCAAATGAACACTACAAGGCATGGGTGAGAGGTTCAACTTGGATTCCAATATTTGATGTTGATCATACACTAGATGCTGGAACCATTCCCAGAAAAATCACAAATTTCGTTATGGGAGGTTGGTGGAGTGGCATGCCTACACTGTCTTACGAAAGCCAGTTCTTGGCCAAAGTTGAGGAGAAGTTTCCCAAAGATACAGAATTAATTGTTGCATGCCAGAAGGGACTGAGATCACTAGCTGCCTGTGAACTACTGTATAATGCTGGCTACAAAAATCTGTTCTGGGTTCAAGGAGGCTTAGAGGCTGCTGAAGATGAGGATCTCGTTGTAGAGGGTCCAGTGCCTCTTAAGTTTGCTGGAATTGGTGGCGTTTCTGAGTTTCTTGGTTGGACTGATCAACAAAGAGCTGCTGCAGCCAAGGAAGGTTGGGGATATAGATTAGTGTTTTCCGCACGCCTGCTTGGAATCTTACTTGCCGCCGATGCATTATTTATCGGTGCTCAGCAAATCGGGCACTATCTTCAGGAGATTAGGACCCATTGA 864 0.4491 METLSFPINTLINSKANYISLTASTNYASLSSLQLSPSSTSTPLCWKGVVRVQAESEDFELKQMRDMAAARKRWEALIRDGKVKVLTPREAGYAVQLSNKPLLDVRPSNEHYKAWVRGSTWIPIFDVDHTLDAGTIPRKITNFVMGGWWSGMPTLSYESQFLAKVEEKFPKDTELIVACQKGLRSLAACELLYNAGYKNLFWVQGGLEAAEDEDLVVEGPVPLKFAGIGGVSEFLGWTDQQRAAAAKEGWGYRLVFSARLLGILLAADALFIGAQQIGHYLQEIRTH* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5310 287 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 21 285 IPR044664 -
Lja1g5310 287 Gene3D - 83 252 IPR036873 -
Lja1g5310 287 SMART rhod_4 86 216 IPR001763 -
Lja1g5310 287 Pfam Rhodanese-like domain 92 209 IPR001763 -
Lja1g5310 287 CDD RHOD 102 209 - -
Lja1g5310 287 ProSiteProfiles Rhodanese domain profile. 96 219 IPR001763 -
Lja1g5310 287 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 81 219 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5310 Lja-Chr1 82351288 82357168 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5310 1 287 Sulfurtransferasese or Rhodanese AT4G24750 69.178 1.04e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5310 - - gmx:100791331 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5310 1 82351288 82357168 Lja1g5310 1 82351288 82357168 ECH