Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5301 ATGTCTATCACCTCCTTCAAATCCCTCACAACAATGGCGGAATCATGTCTTCTCTCTGCACCCTCCTCACTCTTCTACAACAAAACCAAACACCTCTTCTTCTCAGCTCCCTCCAGACCCCTCAAACTCCAACTCTCATCCATCAACCCTTCACCCGCTCTCTCCCTCGCCGCCACAACCCACCACCGCTCTTCCGCGCCCCTCTTCGTCGCCCAGACTTCCGACTGGGCCCAGCAAGAAGAAGACAACACGCTCACCCTCGAAGACCAAGAAGAAGGAGCAGAAGGTGTCAGCGAAACCGAAGCGGGTTGGGAACCCAACGGTGAAGACGCTGAAATCGAGGGTGCTGAAGAAGGAGAAGGAGAAGAAGGAGATTACGAGGAACCACCAGAAGAGGCTAAACTCTTTGTTGGGAACTTGCCTTATGATGCTGATGGTCACAAATTGGCCGAACTTTTCAACCAAGTTGGAACCGTGGATCTTGCGGAGGTTATTTATAACAGGGAAACTGACCAGAGCCGTGGCTTTGGATTTGTCACCATGAAAACGGTTGAAGATGCTGAGAAAGCTGTGGATAAGTTAAACGGCTATGATTTCGGTGGTAGACTGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCTAGGCCAGAACGTGCCCCTCGTAGCTTTGATGCCCAACCTGCCTTTAGAGTATATGTTGGTAATTTGCCATGGGATTTTGACAATAGTCAGTTGGAGCAGGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCCCGGGTAGTGTATGATAGAGAAACTGGACGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGGCAGAATTGAATGATGCCATTGCTGCCCTTGATGGTCAGAGTTTGGGCGGGAGGACAATCAGAGTGAATGTTGCAGAAGATAGGCCAAGGCGTTCCTTTTGA 942 0.4968 MSITSFKSLTTMAESCLLSAPSSLFYNKTKHLFFSAPSRPLKLQLSSINPSPALSLAATTHHRSSAPLFVAQTSDWAQQEEDNTLTLEDQEEGAEGVSETEAGWEPNGEDAEIEGAEEGEGEEGDYEEPPEEAKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5301 313 CDD RRM_HP0827_like 230 306 - -
Lja1g5301 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 301 IPR000504 GO:0003723
Lja1g5301 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
Lja1g5301 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Lja1g5301 313 MobiDBLite consensus disorder prediction 105 129 - -
Lja1g5301 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Lja1g5301 313 CDD RRM_HP0827_like 134 211 - -
Lja1g5301 313 PANTHER OS02G0815200 PROTEIN 2 312 - -
Lja1g5301 313 SUPERFAMILY RNA-binding domain, RBD 220 311 IPR035979 GO:0003676
Lja1g5301 313 SUPERFAMILY RNA-binding domain, RBD 128 223 IPR035979 GO:0003676
Lja1g5301 313 MobiDBLite consensus disorder prediction 87 130 - -
Lja1g5301 313 SMART rrm1_1 230 303 IPR000504 GO:0003723
Lja1g5301 313 SMART rrm1_1 134 207 IPR000504 GO:0003723
Lja1g5301 313 PANTHER RIBONUCLEOPROTEIN 2 312 - -
Lja1g5301 313 Gene3D - 71 216 IPR012677 -
Lja1g5301 313 Gene3D - 217 312 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5301 Lja-Chr1 81830417 81833373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5301 135 311 Eukaryotic Initiation Factors Gene Family AT3G16380 36.898 2.67e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5301 - - gmx:100810381 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5301 1 81830417 81833373 Lja4g2352 4 26025756 26029032 ECH
Lja1g5301 1 81830417 81833373 Lja1g5301 1 81830417 81833373 ECH
Lja4g2352 4 26025756 26029032 Lja1g5301 1 81830417 81833373 PCT