Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5298 ATGGCTGAGAAAATCCACCACCGCCGCCACCACCACCATCACCATCACCACCACCGTCATCACCACTTGTTTCTATTCTCATTACTATCCCTCTTCTTCTCCACCATCCATGCCAACCTCCATCTCCACCCTTCAGATTCCAAGGCCCTTTTAACTCTCCAAAAGGCCTTTGGAGTCAACGGTCAACGCTACCAGACTGTAACAACAAACTCTGCAACCACCACTAACCCATGTAACTCCGACGGCGTGTTCTGTGAGCGGAGGCTCTCCGCCACCGAGAACAGCTACGTCCTCCGTATCACGAGGCTTGCCTTCACCTCCCACCACCTCACTGGCGTACTTTACCCTGCAATTGGCAACCTCACAGAGCTCAAAGAGCTCTCTCTCTCAAACAACAACCTCGTTGACCGAATTCCTCCCCAAATCGTTGACTGCCGGAAGCTCGAGATTCTCGACCTCTCCAACAACTACTTCTCCGGCAAAGTCCCGCCGGAGCTCTCCTCCCTCATCCGCCTCCGCATCCTCGACCTCTCCTCCAATAAGCTCTCTGGCAACCTCAATTTCCTCCGGTACTTCCCCAATCTCGAAAAGCTCTCCATCTCCGATAACCTCTTCACCGGAAGAGTTCCCGCTTCGATACGCTCCTTCCGCAACCTCAGACACTTCAACTTCTCCGGGAATCGCTTCCTCGAAGGCTCTCAGACGCATAATCACAAACACCTTGCAGGCAACAGTGATGAGGTTCTTCCCAAACGCTACATCTTCGCTGAGGATGTAAGGAATGGTGAAATTGGTTCTCCTGCACCGTCTGCACATGCTCCATCTTCATCCCGCAAGAGGAAATCCAATTCCACGGTTGCGGCTGCGGCAGCTCCTGGTCCTGCTCACCACCACAAGCACAAATCAAGTAAGAGGAAGCTTGCAGGGTGGATTGTAGGGTTTATAGCTGGGGCTTTTGCTGGGACTCTTTCAGGGTTCATATTCTCTTTGCTGTTCAAATTGGCTTTAGCTTTGATCAAGGGTAGAGGGAAGGGTTCAGGGCCTGCTATTTATAGCTCATTGATTAAGAAAGCTGAAGACTTGGCTTTCTTGGAGAAGGAAGATGGAATGGCCTCTTTGGAATGCATTGGAAAAGGTGGTTGTGGAGAGGTTTACAAGGCGGAGTTACCCGGAAGCAACGGCAAAATGATTGCCATCAAGAAGGTTATTCAGCCTCCTAAAGATGCAGCAGATTTAGCAGAAGAAGACAGCAAGGCTCTGCATAAGAAGATGAGGCAGATAAAGTCTGAAATCAACACGGTCGGTCAGATTCGACACCGGAACCTTCTGCCTCTGCTTGCTCATGTTTCCAGGCCTGATTGCCACTACCTTGTGTATGAGTACATGAAGAATGGGAGCTTGCAGACTTGTTTGGAGAGAGTAGATAATGGTGAGATGGTGTTGGATTGGATTTCGAGGCATAGGATTGCTCTTGGTATAGCAGCAGGGCTTGAGTACCTTCACGTGAGTCACAGTCCTCGAATCATTCACCGCGACCTCAAGCCTGCAAACATCCTTCTTGATGATGACATGGAAGCTCGAATAGCCGATTTCGGGCTTGCGAAAGCCATGCCTGATTATCAGACACACGTCACAACTTCGAATGTGGCAGGCACTGTGGGGTACATAGCACCAGAGTATCACCAGATACTCAAGTTCACAGACAAGTGTGATATTTACAGCTTTGGGGTTATTCTTGGTGTTTTGGTGATAGGGAAATTGCCTTCAGATGATTTTTTCCAGCATACTGATGAGATGAGCTTGGTCAAGTGGATGAGAAAGATGATGACTACAGAAAATCCCAAGGAAGCAATTGATACAAAGCTTTTGGGTAATGGGTTTGAGGAACAGATGCTTCTGGTTCTCAAAATTGCTTGTTTTTGCACCATGGATGACCCTAAGGAGAGGCCTAACAGTAAGGATGTTAGGTTGATGTTGTCACAGATCAAGCACTGA 1995 0.4892 MAEKIHHRRHHHHHHHHHRHHHLFLFSLLSLFFSTIHANLHLHPSDSKALLTLQKAFGVNGQRYQTVTTNSATTTNPCNSDGVFCERRLSATENSYVLRITRLAFTSHHLTGVLYPAIGNLTELKELSLSNNNLVDRIPPQIVDCRKLEILDLSNNYFSGKVPPELSSLIRLRILDLSSNKLSGNLNFLRYFPNLEKLSISDNLFTGRVPASIRSFRNLRHFNFSGNRFLEGSQTHNHKHLAGNSDEVLPKRYIFAEDVRNGEIGSPAPSAHAPSSSRKRKSNSTVAAAAAPGPAHHHKHKSSKRKLAGWIVGFIAGAFAGTLSGFIFSLLFKLALALIKGRGKGSGPAIYSSLIKKAEDLAFLEKEDGMASLECIGKGGCGEVYKAELPGSNGKMIAIKKVIQPPKDAADLAEEDSKALHKKMRQIKSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEYMKNGSLQTCLERVDNGEMVLDWISRHRIALGIAAGLEYLHVSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDYQTHVTTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSDDFFQHTDEMSLVKWMRKMMTTENPKEAIDTKLLGNGFEEQMLLVLKIACFCTMDDPKERPNSKDVRLMLSQIKH* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5298 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 24 664 - -
Lja1g5298 664 SUPERFAMILY Protein kinase-like (PK-like) 366 659 IPR011009 -
Lja1g5298 664 SMART serkin_6 370 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5298 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Lja1g5298 664 SUPERFAMILY RNI-like 99 229 - -
Lja1g5298 664 MobiDBLite consensus disorder prediction 264 302 - -
Lja1g5298 664 MobiDBLite consensus disorder prediction 270 284 - -
Lja1g5298 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 664 - -
Lja1g5298 664 Coils Coil 410 430 - -
Lja1g5298 664 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Lja1g5298 664 Gene3D Ribonuclease Inhibitor 45 189 IPR032675 -
Lja1g5298 664 Gene3D Ribonuclease Inhibitor 190 243 IPR032675 -
Lja1g5298 664 Gene3D Phosphorylase Kinase; domain 1 359 461 - -
Lja1g5298 664 Pfam Protein kinase domain 373 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5298 664 ProSiteProfiles Protein kinase domain profile. 370 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5298 664 Gene3D Transferase(Phosphotransferase) domain 1 462 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5298 Lja-Chr1 81255484 81257849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5298 26 664 Receptor kinase-like Gene Family AT2G31880 62.634 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Lja1g5298 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5298 - - gmx:100811980 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5298 1 81255484 81257849 Lja1g5298 1 81255484 81257849 ECH