Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5292 ATGACAAGCATTCTACTCTCTTTGGTAATCTTGCTCTTCTCTTTTCTCATTCCAATCCTCATTTCCTCCTCACATGTTCAAAACCCTGAATTGGCAGTGCAAGAAGTAAACAGGAAAATCAATGCCTCTATAGCTAGGAGGAACTTGGGGTACCTATCATGTGGGAGTGGAAACCCTATTGATGATTGCTGGAGGTGTGACACCAATTGGGAGAACAATAGGCAAAGGCTAGCAGATTGTGCAATAGGATTCGGCAAGAACGCAATTGGAGGCAGGGACGGCAAGATCTACGTAGTGGACGATGCCAGTGACGACGACCCCGTGACCCCAAAGCCGGGTACGCTCCGGCACGCGGTGATCCAGGACGAGCCGCTCTGGATCATCTTTGCCGGAGACATGGTGATCAAGTTAAAAGAAGAGCTGATCATGAACTCTTTCAAAACCATTGACGGCAGGGGTGCGAGCGTGCACATTGCTGGCGGTCCTTGCATAACAATACAGTACGTGACCAATGTGATCATTCATGGGATACACATCCATGATTGCAAGCAGGGTGGGAATGCTATGGTGCGGGACTCCCCACGACACTATGGGTGGAGGACCATATCAGACGGTGATGGCGTGTCGATCTTTGGAGGGAGCCAGGTGTGGGTGGACCATTGCTCGTTGTCGAATTGCAAGGATGGATTGATCGATGCGATTCATGGGTCCACCGCAATTACCATATCCAACAATTACATGACTCACCATGATAAAGTCATGTTGTTGGGTCACAGCGATTCTTACACAGATGACAAGAACATGCAAGTCACAATCGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCCACCATCAACAGCCAAGGCAATAGATTTGTTGCACCCGATGACAGATTTAGCAAAGAGGTAACAAAGCATGAAGATGCCCCAGAGAGTGAATGGCAGAACTGGAACTGGAGATCAGAAGGGGACATGATGGTAAACGGTGCATTTTTCACAGCAACGGGTGCTGGAGCTTCTTCTAGCTACGCCAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTTGCTTCCATAACAAGTGGTTCTGGAGCACTTGACTGCAAGAAAGGTTCTCCTTGCTGA 1221 0.4832 MTSILLSLVILLFSFLIPILISSSHVQNPELAVQEVNRKINASIARRNLGYLSCGSGNPIDDCWRCDTNWENNRQRLADCAIGFGKNAIGGRDGKIYVVDDASDDDPVTPKPGTLRHAVIQDEPLWIIFAGDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSQVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTDDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWQNWNWRSEGDMMVNGAFFTATGAGASSSYARASSLSARPSSLVASITSGSGALDCKKGSPC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5292 406 PANTHER PECTATE LYASE 1 403 - -
Lja1g5292 406 Gene3D - 57 399 IPR012334 -
Lja1g5292 406 SUPERFAMILY Pectin lyase-like 36 400 IPR011050 -
Lja1g5292 406 Pfam Pectate lyase 139 323 IPR002022 -
Lja1g5292 406 PANTHER PECTATE LYASE 18-RELATED 1 403 IPR045032 GO:0030570
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Lja1g5292 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Lja1g5292 406 SMART amb_all 132 329 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5292 Lja-Chr1 81059278 81062890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5292 1 406 Polysaccharide Lyase AT5G63180 78.729 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5292 K01728 - gmx:100814679 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5292 1 81059278 81062890 Lja4g2362 4 26436656 26438978 ECH
Lja1g5292 1 81059278 81062890 Lja1g5292 1 81059278 81062890 ECH
Lja4g2362 4 26436656 26438978 Lja1g5292 1 81059278 81062890 PCT