Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5291 ATGGATGGGCGGCGGCATTCTGTTGACATTCCCATTTCTAAAACTCTTGTAGCACTGAGGAGGGTCAGGTCATTGAGGGATCCATCAACTAATTCTATATGCAAACGCTCTTCTTTGATTGACAATGTGCAGTGGGAGAATGGTTCGGGTAATGGGATTTCTCTATTGTTTCCGGAGGCTAGTAGGGAATGTGATTCTGATGATAATGTTGATTTCACATCAAGGAATTTAGGTTTTAAGGGACAAAGAGTGCAGGATGCTACTGATTTTAAATTGGACTGTGGCTTGTTAGGTTCAAGGCTGAAACCTAGTGGGATGTCATTTCAGGACAGCCAACACAACGACGATGAGCTAGTTTACTCTAATCCAAATAGGCAATGCAGTTCAGGAAATAAATCATCAAGTGAAAGCTGTGATAGCAACCATGGGGGTGAGGGATTAGATTTGGCTAGTATTGAGCCTCATAGTAATAATTTCAGGGATGGGGAATCATGCTTTATAGCTACTGCCAAATCATCTCAATTAGGGAGAATAGATCACTCTAGGTCAGACAAAAAATCTCTACGTGCGAATCAAGTAAGACCAGCACAAGTAGAGGGTGGTATTGTTAACCATGTAGGCAATCCTTGTCTTTCTGTTCATGATGATTTCTCACCACACAGCACTTCAGTAGATATCAATCAAGATTTTGATGTTCTTGATAATAATGATAATGGATGTGGAATAAGCTTTTGTTGGTCAAAATCACCGAGGTTTAGAGAATCAAATCTTTACTCTAAGATAGAAGACCGTCCCTTGATATTGCACCAAGTTGATGACACTGATCTTCATGGAGATAGAAACATGAGACACGACGGTGGTGACATTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCTAATTCATTTAGTGATCTGGTGGGACAGAATGTGGTAGTGAGATCTCTTTTAGGCGCCATCTCAAGAGGAATGATAGCATCATTTTATCTGTTCCATGGTCCACGTGGTACAGGCAAGACATCTGCTTCTAGGATATTTGCTGCAGCACTGAATTGCCTCTCTGTTGAGGGGCAAAAACCATGTGGCCTGTGTAGAGAGTGTGTTCTGTTCTTTTCTGGAAGAAGTAAAGAGGTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACAGACCAGGTTAAATCCCTCGTTAAGAATGCATGTATCCCTCCCATTTCCTCACGATTTAAGGTTTTCATTATTGATGAGTGCCAGTTACTGAAGGCTGAGACATGGGCGAGCCTTTCGAATAACCTAGAGAACCTTTCTGAGCATGTGGTTTTTGTTATGATCACTCCTGATTTAGATAAACTTCCTCGAAGTGCAGTTTCCCGGGCTCAGACCTATCACTTTCCGAAGGTTAAAGATGCTGACATTGCATGCAGATTAGAAAAGATTTGTGTTGAAGAAGGTCTTGATTTTGATCAGGCTGCTTTAGACTTCATTGCTGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAGATTAAACTTTCATTAGTTCATGAGCTTACTGGGATTGTTTCTGATGATGAATTGCTCAATTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCTCGAGAGCTGATGAGATCCAGGATAGGTCCTTTGCAACTTGTATCACAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGTAGATGGTGGTTCTGAGGTCAGAAGTAAATTTTCTGGTAGATATACCTCGGAAGCCGACCTTCAGAAATTAAGCCGGGCAGTGAGAATACTTTCTGAAGCTGAGAAACAGTTAAGAATTTCAAAAAACCAAACAACGTGGTTAACTGTAGCTCTACTGCAGTTAAGCTCTGTAGATTATCCTTCCGTGGATGTAAATGATACAAAGTTGTGTTTGAGAGAGCAGAGCATGGAGCATCTTGCTACAGGTCAGTGTGGCGACAAGTCATATAGATTAGGAGTGCAGGAGGATCACAAAGGAACATTGGATGCCATATGGTATAAAGCTACTGAGATATGTCAATCTGGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTAGATCGCAGTACATCATGGCTTGCTATCGCCGAGTTGGAGTTCCGCCATCGGCACCATGTATCCAAGGCTGAGAAGTCATGGAAATTGATTGCAAGTTCGTTGCAGTTCATATTGGGTTGTAACATTGAGCTGAGGATCACTTATGAACCCCGTGCTTCTGATTCCAAGTATGCCAAACTGAAGAGGTCATCTTTCAGTATCTTTAGCTGTTCACGCAGAGCACAACAGAAATCATTATCGTCTAATGGAAGCGAATCAGATTATGCTGATCACGTCTCTCAAAATCCCATGATAAAGGATAAAACTCTAACTTCCTCTGATTACCATGGAATGGATGTTGTAACAACTTTGAGAAGCTGCAAAGGGAACTTGCTGAGCTCAGGAGAAAGATTTTTGAATAGGTCTTTCCAAGAGAATATGGGGACATCATGTTCTGAAGTTGATTCCTCTAAGGAAAAAGGAAACAGATGTGCACATTTAGTTCCATCAGTCCTTGAGTCAGATTATCAGTCCAACTGTTTTCCTCAAAATCTCTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTCAACTTTGCAGGGTATCTAA 2760 0.413 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPEASRECDSDDNVDFTSRNLGFKGQRVQDATDFKLDCGLLGSRLKPSGMSFQDSQHNDDELVYSNPNRQCSSGNKSSSESCDSNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGRIDHSRSDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHSTSVDINQDFDVLDNNDNGCGISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIELRITYEPRASDSKYAKLKRSSFSIFSCSRRAQQKSLSSNGSESDYADHVSQNPMIKDKTLTSSDYHGMDVVTTLRSCKGNLLSSGERFLNRSFQENMGTSCSEVDSSKEKGNRCAHLVPSVLESDYQSNCFPQNLWLQKKFRSSYSSKSTLQGI* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5291 919 MobiDBLite consensus disorder prediction 123 153 - -
Lja1g5291 919 Gene3D - 535 648 - -
Lja1g5291 919 SUPERFAMILY post-AAA+ oligomerization domain-like 535 645 IPR008921 GO:0003677|GO:0006260
Lja1g5291 919 MobiDBLite consensus disorder prediction 123 141 - -
Lja1g5291 919 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 298 644 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lja1g5291 919 Coils Coil 613 633 - -
Lja1g5291 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 520 IPR027417 -
Lja1g5291 919 Gene3D - 292 469 IPR027417 -
Lja1g5291 919 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 109 895 - -
Lja1g5291 919 CDD HLD_clamp_pol_III_gamma_tau 471 534 IPR045085 -
Lja1g5291 919 Pfam DNA polymerase III, delta subunit 314 471 - -
Lja1g5291 919 Gene3D - 472 534 - -
Lja1g5291 919 MobiDBLite consensus disorder prediction 277 296 - -
Lja1g5291 919 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 109 895 - -
Lja1g5291 919 CDD AAA 312 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5291 Lja-Chr1 80968124 80972336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5291 289 627 Core DNA Replication Machinery Family AT1G21690 23.754 3.12e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5291 - - gmx:100819111 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5291 1 80968124 80972336 Lja1g5291 1 80968124 80972336 ECH
Lja4g2363 4 26471769 26477701 Lja1g5291 1 80968124 80972336 PCT